RNA id: TU1018037



Basic Information


Item Value
RNA id TU1018037
length 302
lncRNA type antisense_over
GC content 0.65
exon number 1
gene id G894832
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45764545 ~ 45764846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAGGGCCGGGGTGAAGCCAAGGCACTGTGCTGAAGTACAGGCCGGTCCCTGGGCGTAGGGGGCTCAGCATGGGTGGGGGTGTGTAAGGAGGAGGCTGGAAGCTGGGGTTGAGCAGGTGGTCTGCCAGGTACATGGGGGAGCGTAGCTGACTGGGGTAGCCGCCTGCTGCACGACACCAGGGAGCACCCCCACCCTCCTCGCCTAGGAGCCTCCGTGGGGACGGCTGTGGGAGCATGGGGGGAGGAATGATCAGAGTCTTCATGAAGTCAAGACGTCGGCTCCTCTTTGACCTCCCTGAACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1017999 lncRNA downstream 48881 45713724 ~ 45715664 (-) True defbl2
TU1017956 lncRNA downstream 79433 45684861 ~ 45685112 (-) True G894761
TU1017978 lncRNA downstream 99505 45664840 ~ 45665040 (-) True G894783
TU1017976 lncRNA downstream 101152 45663116 ~ 45663393 (-) True G894781
TU1017971 lncRNA downstream 104908 45659302 ~ 45659637 (-) True G894776
TU1018075 lncRNA upstream 28965 45793811 ~ 45794541 (-) True G894841
TU1018078 lncRNA upstream 39514 45804360 ~ 45804652 (-) True G894844
TU1018099 lncRNA upstream 63152 45827998 ~ 45828752 (-) True G894864
TU1018131 lncRNA upstream 113425 45878271 ~ 45878761 (-) True G894895
TU1018146 lncRNA upstream 134620 45899466 ~ 45899720 (-) True G894906
XM_021618688.2 mRNA downstream 13140 45747301 ~ 45751405 (-) False LOC110534046
XM_036934580.1 mRNA downstream 15986 45747090 ~ 45748559 (-) False LOC110534046
XM_021618684.2 mRNA downstream 17958 45741820 ~ 45746587 (-) True LOC110534044
XM_036934578.1 mRNA downstream 49166 45713613 ~ 45715379 (-) False defbl2
XM_021618680.2 mRNA downstream 53891 45708157 ~ 45710654 (-) True wdr73
XM_021618690.2 mRNA upstream 8984 45773830 ~ 45777804 (-) False LOC110534049
XM_021618689.2 mRNA upstream 8984 45773830 ~ 45778105 (-) False LOC110534049
XM_036990452.1 mRNA upstream 8984 45773830 ~ 45778106 (-) True LOC110534049
XM_021618692.2 mRNA upstream 21055 45785901 ~ 45789814 (-) True LOC110534051
XM_036990465.1 mRNA upstream 121055 45885901 ~ 45894223 (-) True LOC110534055
TU1018024 other downstream 14214 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other downstream 16592 45747315 ~ 45747953 (-) True LOC110534046
TU1016641 other downstream 748498 45011329 ~ 45016047 (-) True LOC110534025
TU1016497 other downstream 995473 44768450 ~ 44769072 (-) True G893541
TU1016171 other downstream 1455612 44306219 ~ 44308933 (-) True LOC110534000
TU1018170 other upstream 152433 45917279 ~ 45918339 (-) True G894917
TU1019905 other upstream 1465958 47230804 ~ 47233046 (-) True LOC110534118
TU1020355 other upstream 2222915 47987761 ~ 47989076 (-) True G896841
TU1021210 other upstream 3116881 48881727 ~ 48884075 (-) True LOC110534172
TU1023166 other upstream 4391346 50156192 ~ 50156902 (-) True G899409

Expression Profile