RNA id: TU1017131


Basic Information

Item Value
RNA id TU1017131
length 423
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G894070
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45788174 ~ 45788596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATGCACCCAGGTGGATAGAGATTCTGCCATTTCAGGAACAGGAATTCCCTCAAAGTCAGAATTCTCTTCAAAGCTGTCTCGggctccctcctcttcctcctcaccttcctcctctGCAAACTGATAGAACccgaggggactgacctgtgtgCCGGCAGAGATGCGAGCAATTTGGGCTCGCAAATAGTTGGCCTCATTGCCAGGAAAAGGAGGATAGCTGATGATGGGGGCATCCAGTCTCCCTGTGAAGAATTTGCGGATGTGGCGTGCAGCTGTGATCTGGGTGGGAGTGACAGTGGGCAGCTTCACCCAGGGAAGGCCAGGCTCTCTGCACACAAAGTAAGTAAACTTGTTCACACCTGTGCGATTGTCCTCCTTTGGCACCACAGGCGGGGGCTTGAAGGTGGATCTTGGGAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017128 lncRNA upstream 2396 45785523 ~ 45785778 (+) True G894067
TU1017129 lncRNA upstream 2809 45784669 ~ 45785365 (+) True G894068
TU1017091 lncRNA upstream 41153 45689738 ~ 45747021 (+) True G894037
TU1017051 lncRNA upstream 111277 45676602 ~ 45676897 (+) True G894028
TU1017042 lncRNA upstream 130126 45657818 ~ 45658048 (+) True G894021
TU1017134 lncRNA downstream 100 45788696 ~ 45788966 (+) False G894071
TU1017135 lncRNA downstream 100 45788696 ~ 45788998 (+) False G894071
TU1017132 lncRNA downstream 108 45788704 ~ 45788998 (+) False G894071
TU1017133 lncRNA downstream 108 45788704 ~ 45788966 (+) True G894071
TU1017136 lncRNA downstream 846 45789442 ~ 45789736 (+) True G894072
XM_021618691.2 mRNA upstream 5586 45778283 ~ 45782588 (+) True LOC110534050
XM_036990451.1 mRNA upstream 18012 45759700 ~ 45770162 (+) False LOC110534034
XM_021618671.2 mRNA upstream 18012 45759975 ~ 45770162 (+) True LOC110534034
XM_036990450.1 mRNA upstream 47331 45724817 ~ 45740843 (+) False LOC110534032
XM_021618693.2 mRNA downstream 3612 45792208 ~ 45800378 (+) False LOC110534052
XM_021618695.2 mRNA downstream 3612 45792208 ~ 45800378 (+) False LOC110534052
XM_036990453.1 mRNA downstream 3612 45792208 ~ 45800378 (+) False LOC110534052
XM_036990454.1 mRNA downstream 3612 45792208 ~ 45800378 (+) False LOC110534052
XM_021618694.2 mRNA downstream 3614 45792210 ~ 45800378 (+) False LOC110534052
TU1017032 other upstream 144618 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 195865 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 203540 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 219582 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 777325 45008834 ~ 45010849 (+) True G892499
TU1017187 other downstream 112449 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 327689 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 838696 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1251918 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1353448 47142044 ~ 47151549 (+) False LOC110511048

Expression Profile