RNA id: TU1017132


Basic Information

Item Value
RNA id TU1017132
length 295
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G894071
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45788696 ~ 45788998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACATCGGCTTCCTCATCATCATCCCGAggttctccatctctttcctcaTCTTCCACTGTTTCCTCAttaccctcttcctcctcctccccctctctgtactCGCACTCAGCAACAAGATAGTTGCCCCCTGTGCCCAGGATTTTGCCCCAAAGTCGGCAGCGCACTAGCGGTTGGGAATCCACCAGCTGCTTGAGTGCCAGGAAGACCATCAGCATCTCCTCTCTACCCAGTCCCACTCCAGCCTGCTCGAGGAAGAAGCCAAGCTCACTCACATTGGGAAGCGGTGTTTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017131 lncRNA upstream 108 45788174 ~ 45788596 (+) True G894070
TU1017128 lncRNA upstream 2926 45785523 ~ 45785778 (+) True G894067
TU1017129 lncRNA upstream 3339 45784669 ~ 45785365 (+) True G894068
TU1017091 lncRNA upstream 41683 45689738 ~ 45747021 (+) True G894037
TU1017051 lncRNA upstream 111807 45676602 ~ 45676897 (+) True G894028
TU1017136 lncRNA downstream 444 45789442 ~ 45789736 (+) True G894072
TU1017144 lncRNA downstream 3265 45792263 ~ 45800374 (+) True LOC110534052
TU1017152 lncRNA downstream 11926 45800924 ~ 45804121 (+) True G894074
TU1017164 lncRNA downstream 83702 45872700 ~ 45872787 (+) True G894084
TU1017166 lncRNA downstream 86212 45875210 ~ 45876191 (+) True G894086
XM_021618691.2 mRNA upstream 6116 45778283 ~ 45782588 (+) True LOC110534050
XM_036990451.1 mRNA upstream 18542 45759700 ~ 45770162 (+) False LOC110534034
XM_021618671.2 mRNA upstream 18542 45759975 ~ 45770162 (+) True LOC110534034
XM_036990450.1 mRNA upstream 47861 45724817 ~ 45740843 (+) False LOC110534032
XM_021618693.2 mRNA downstream 3210 45792208 ~ 45800378 (+) False LOC110534052
XM_021618695.2 mRNA downstream 3210 45792208 ~ 45800378 (+) False LOC110534052
XM_036990453.1 mRNA downstream 3210 45792208 ~ 45800378 (+) False LOC110534052
XM_036990454.1 mRNA downstream 3210 45792208 ~ 45800378 (+) False LOC110534052
XM_021618694.2 mRNA downstream 3212 45792210 ~ 45800378 (+) False LOC110534052
TU1017032 other upstream 145148 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 196395 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 204070 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 220112 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 777855 45008834 ~ 45010849 (+) True G892499
TU1017187 other downstream 112047 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 327287 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 838294 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1251516 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1353046 47142044 ~ 47151549 (+) False LOC110511048

Expression Profile