RNA id: TU1017238


Basic Information

Item Value
RNA id TU1017238
length 2757
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G894133
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46130941 ~ 46133731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcagcagttcctgcaagaggaaggcattgatgctatggactggcccacccgttccccagacctgaatccaattgagcacatctgggacattgtgtctcgctccatccaccaacgccacgttacaccacagactgtccaggagttggcggatgcttaagtccaggtctgggaggagatccctcaggagacaattcgccacctcatcaggagcatgcccaggcattgtagggaggtcatacaggcacgtggaggccacacacactactgagcctcattttgacttgttttaaggacattacatcaaagttggatcagcctgtagtgtggttttccattttgagtgtgactccaaatccagacctccatgggttgatacatttgatttccattgataatttgtgtgattttgttgtcagcacattcaactatgtaaagaaaaaagtatttaataagaatatttcattcagtcagatctaggatgtgttattttagtgttccctttattttttttgagcagtgtatatgttatccattttagaataaggctgtaatgtaacaaaagggGGAAgggttctgaatgcactgtatacagtgagctccaagttttgggacagtgacacacttgttgttttggctctgtactccagcactttggatttgaaatgatactatgaggttaaagtgcagacagTCTGCattcatttgagggtattttcctcCACATcgggtgaactgtttagaaattaccACACCTTTTGTACATAGGCCCCCGCACATTTTAGGGGACTAAGTGAATTTGTTCCAAAACTTTTGAAGGTGTATTAAAGTtttgtatttggtcccatattccttgcaCGCAATGATTacgtcaagcttgtgactctataaacttggatgcatttgctgttggTTTTTGTGGTTTCAGATTTTGTGCCCAatggaaatgaatggtaaataatgtattgtcatttctggagtcacttttatcatatataagaaatagaatgtttctaaacacttctaaattaatgtggatgctaccatgattacggatagtccttAATGAATTACACATTTTTCTGTCATTTCTAAACTGTTCTCCTGAGTCTTTTtattcaaatccaaaatgctggagtaaagagccaaaacaacaaatgtgtcgCTGTCCCAATACATTTGGATCTCACTGTAGTTTTTGAACATTGTACAGGATTGTTATtacatttgtttacatttgtTATTAGTATTTGTTTACGCTTTTAAGTTTCTGTTTTTCCATTGTTTCTATTGCTTTTGACACCTTTCTGGGTTTGCAAACATTGCCGCACAAGGGCGACGCTGCAAGTTGGTAGCGGAACACGGGAGTTCTTACAGAACATGCTGCTTACGAGTGCATATCACACTACTTTTGGAGTATAGTTGGATTTTAAGGCTCGTAATAATGTCCTGTTTTAATGTTTATCATcgcaaatcaactgcattacacttcaaccagtaaaatggctcTTTGGCTATCTTTTGCTACAGCCTATATCAATGAGTGTTAGCATTCTAGCTACCTGCTGCATTCAAAAGTTATTTTGCAAAGAtcacaaccaaatataatcttAACTACTGTTCAAGCAAATGTCAAAACATCCATTGTAAGCGTATGAGAacctaaatgtattttgttttagGAGTAATAAAAACGTAAATTCAGGTAAATGGGCACAGATGGCAGTGTGTCGTGTACTGTCCCCATTGCCATGTATTGTTTTTAGACGtctccttttttttcttttttttttaaagggagtTGTATGTCTGCAAGATATCTGTAAAGTATCACTTTCATAGGCAATAGGGAAGACTTAACATGGAACAATTCATCTTACTTGGGAAATGTGTTTGAACTCAACCTCAATCTTTTGAGAATATGGAATAGGTATGTGTTCACTTTATGCAAAACACACTTCTTAAATTTCTGTCTTGTTTCTGATGTCTAACTTTGTCTGGTGTCCAAAGATGAAGGGAAAAGGAAGGGTTTgaacaaaaatgttttattaaaagcATGTTTTCCATGACGAATGCTGCTTGCTTTTGACACTGATGATGATCCTGATTTTTCTAGCTATTTTATTGTTTTGTCGGGGAAAAATGTACAATGTTGAAcatgtacagcaatatttaatgTATTGAACCAAATTTGTTAATACCGGTAGGCCAGTTTCCATGTGCAGTCTTGCGTCATGTCAGTATGGACACAGACCACCAAGAGGAGGGTAAGAGCTAGGCATCGCATCTCAATGGAgaaataattattttatttcagaaGCTCTGCGATCAGGTTTCTAAAAAAAAATTCCAACGGACTATGATCTGTGTTTGGAATGTACAAGCTGTTTTGTTAACTGGGTGCATGTATGATGGTATAACACCCTATTGTGGCGTGAATGCATCATGGCTTTAACCTTCTAGTTTCAGTAACTTACATTAATGACGGATATTTTGCGCTACGTTGTATAGGCACATTTGTCGAAGTATATTCGTGGCTCCATTTCCTTTGATTTAATATTAGCATTTTATTGATTCTGTTTGCATGCGTTAGTATTTTCTAATGACATTTGTAGGACCCTGTCATACAGTTTTGGTTAATGTTTTTTCTTTTTATGTACTCCAAATTGGGAAATAGTTTGCACAAAGTTTCGTACGTCTAATACAAATGTGTATGTATTATTGTgtacatttttaataaatgtttaaTGCATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017345 lncRNA upstream 26316 46104355 ~ 46104625 (+) True G894198
TU1017344 lncRNA upstream 26867 46103410 ~ 46104074 (+) True G894197
TU1017252 lncRNA upstream 90680 46030145 ~ 46040261 (+) False LOC110534062
TU1017247 lncRNA upstream 90680 46030350 ~ 46040261 (+) True LOC110534062
TU1017299 lncRNA upstream 131487 45999126 ~ 45999454 (+) True G894172
TU1017360 lncRNA downstream 5447 46139178 ~ 46139453 (+) True G894212
TU1017363 lncRNA downstream 14144 46147875 ~ 46148129 (+) True G894215
TU1017377 lncRNA downstream 46733 46180464 ~ 46180736 (+) True G894228
TU1017397 lncRNA downstream 75730 46209461 ~ 46209884 (+) True G894248
TU1017477 lncRNA downstream 145891 46279622 ~ 46280157 (+) True G894321
XM_036990478.1 mRNA upstream 3605 46105321 ~ 46127336 (+) False LOC110534064
XM_036990479.1 mRNA upstream 3605 46105327 ~ 46127336 (+) True LOC110534064
XM_036990476.1 mRNA upstream 41128 46068406 ~ 46089813 (+) False phldb2a
XM_021618713.2 mRNA downstream 9959 46143690 ~ 46151536 (+) False LOC110534065
XM_036990481.1 mRNA downstream 10975 46144706 ~ 46151537 (+) True LOC110534065
XM_021618714.2 mRNA downstream 17949 46151680 ~ 46162320 (+) False LOC110534066
XM_021618715.2 mRNA downstream 17949 46151680 ~ 46162320 (+) True LOC110534066
XM_021618720.2 mRNA downstream 84641 46218372 ~ 46221645 (+) False LOC110534070
TU1017351 other upstream 12998 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 229130 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 487385 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 538632 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 546307 45569452 ~ 45584634 (+) False LOC110534033
TU1017607 other downstream 493561 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 906783 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1008313 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 1008313 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 1069194 47202925 ~ 47204624 (+) False G895652

Expression Profile