RNA id: TU1017741


Basic Information

Item Value
RNA id TU1017741
length 292
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G894561
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46881246 ~ 46881537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATGTGATACTGAATTCTCGCGCGTTGGTTTTCTCCAGGCAAAGACCTTGCCATCTCTATAGTCTACTTCATCTCTTCGAAATTTTCTTAGCTTGTCTTGCTTCAATGTCAGAGTGAATGTGTCTACTTTCTCTTTCAAGATTTCATCACATTGTGCTTTATTTGAATTGTCACTGTGTGCTGTGATTTTCCTTTTTACTTCTTCAATTTCTGTTTGGACTACTTGTCTGTCCTTTTTTAGATTCTTCTATTAGAagaaaagctgttcaaaagaggaccTTGTATTATCTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017738 lncRNA upstream 7246 46873589 ~ 46874000 (+) True G894558
TU1017690 lncRNA upstream 39708 46808735 ~ 46841538 (+) True G894512
TU1017691 lncRNA upstream 70423 46799901 ~ 46810823 (+) False G894512
TU1017692 lncRNA upstream 82013 46797943 ~ 46799233 (+) True LOC110534107
TU1017613 lncRNA upstream 186081 46693019 ~ 46695165 (+) True G894440
TU1017697 lncRNA downstream 14333 46895870 ~ 46896819 (+) True G894518
TU1017698 lncRNA downstream 15401 46896938 ~ 46897829 (+) True G894519
TU1017749 lncRNA downstream 18735 46900272 ~ 46938947 (+) True G894569
TU1017776 lncRNA downstream 69439 46950976 ~ 46951466 (+) True G894596
TU1018835 lncRNA downstream 89916 46971453 ~ 46971807 (+) True G895475
XR_002475084.2 mRNA upstream 13642 46864047 ~ 46867604 (+) True LOC110534109
XM_036990511.1 mRNA upstream 81492 46765048 ~ 46799754 (+) False LOC110534107
XM_021618780.2 mRNA upstream 81492 46765064 ~ 46799754 (+) False LOC110534107
XM_021618778.2 mRNA upstream 133520 46732876 ~ 46747726 (+) False LOC110534106
XM_036990512.1 mRNA downstream 6463 46888000 ~ 46894991 (+) True LOC110534110
XM_021618784.2 mRNA downstream 34599 46916136 ~ 46962543 (+) True LOC110534111
XM_021618788.2 mRNA downstream 127812 47009349 ~ 47016212 (+) True LOC110534113
XM_036990514.1 mRNA downstream 149892 47031429 ~ 47034505 (+) True LOC110533128
XM_021618795.2 mRNA downstream 242332 47123869 ~ 47127973 (+) False LOC110534117
TU1017607 other upstream 180706 46627292 ~ 46700540 (+) True G894437
TU1017351 other upstream 763303 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 979435 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 1237690 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 1288937 45590359 ~ 45592309 (+) True LOC110534033
TU1018880 other downstream 158977 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 260507 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 260507 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 321388 47202925 ~ 47204624 (+) False G895652
TU1019023 other downstream 321709 47203246 ~ 47204624 (+) False G895652

Expression Profile