RNA id: TU1018854


Basic Information

Item Value
RNA id TU1018854
length 281
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G895492
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46991163 ~ 46991443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtctgccagatcagagtcagtaaggatgacaattttcctgtcttgctaagcattcaaagtGTAATGAGTACttgtgggtgtcagggaaaatgtatggagtaaaaaagtacattattttctttaggaatgtagtgaagttctactgtgttattgacttgttaattgtttactccatgtgtaactctgtgttgtctgttcacactgctatgccttatcttggccaggtcgcagttgcaaatgagaacttgttctcaactagcctatctggttaaataaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1018853 lncRNA upstream 619 46990102 ~ 46990544 (+) True G895491
TU1018849 lncRNA upstream 5803 46985044 ~ 46985360 (+) True G895487
TU1018835 lncRNA upstream 19356 46971453 ~ 46971807 (+) True G895475
TU1017776 lncRNA upstream 39697 46950976 ~ 46951466 (+) True G894596
TU1017749 lncRNA upstream 52216 46900272 ~ 46938947 (+) True G894569
TU1018882 lncRNA downstream 52551 47043994 ~ 47044294 (+) True G895517
TU1018881 lncRNA downstream 53413 47044856 ~ 47045118 (+) True G895516
TU1018887 lncRNA downstream 63573 47055016 ~ 47055580 (+) True G895522
TU1018892 lncRNA downstream 64673 47056116 ~ 47056523 (+) True G895527
TU1018987 lncRNA downstream 131084 47122527 ~ 47122815 (+) True G895617
XM_021618784.2 mRNA upstream 28620 46916136 ~ 46962543 (+) True LOC110534111
XM_036990512.1 mRNA upstream 96172 46888000 ~ 46894991 (+) True LOC110534110
XR_002475084.2 mRNA upstream 123559 46864047 ~ 46867604 (+) True LOC110534109
XM_036990511.1 mRNA upstream 191409 46765048 ~ 46799754 (+) False LOC110534107
XM_021618788.2 mRNA downstream 17906 47009349 ~ 47016212 (+) True LOC110534113
XM_036990514.1 mRNA downstream 39986 47031429 ~ 47034505 (+) True LOC110533128
XM_021618795.2 mRNA downstream 132426 47123869 ~ 47127973 (+) False LOC110534117
XM_036990517.1 mRNA downstream 132873 47124316 ~ 47127973 (+) True LOC110534117
XM_036990522.1 mRNA downstream 140692 47132135 ~ 47151344 (+) False LOC110511048
TU1017607 other upstream 290623 46627292 ~ 46700540 (+) True G894437
TU1017351 other upstream 873220 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 1089352 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 1347607 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 1398854 45590359 ~ 45592309 (+) True LOC110534033
TU1018880 other downstream 49071 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 150601 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 150601 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 211482 47202925 ~ 47204624 (+) False G895652
TU1019023 other downstream 211803 47203246 ~ 47204624 (+) False G895652

Expression Profile