RNA id: TU1018887


Basic Information

Item Value
RNA id TU1018887
length 542
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G895522
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47055016 ~ 47055580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGGAAATATTTTCTGGGCTTCATACAACAGTTGAAGGGCCCTTTCTCTCCGCCCTGACCGCAAGCACAGCTTTGCTTTCTCTATCAACCGATCTGATTCCGCTCTATCCATTTTGACAGCTGTTctttttACCGTTAACTTGTTCTCACAGAGGCCTGCAACCCCAATTAGTTACAGTACGCTAGCAACACAATTGCGGTTGACTGCCTGAAATTGTAAGATTTTAGTTAAGCTAGCAATCTTATGTTCAGAATTACCTGGACGTTGTATGTCAACTCAATTAACGGTAACGAACTAGCTTTGTTTACATCCAGAtaacaagctaacgttagctaagctAGCCAGCAATCGGTTAGCTACGATATTTCGCCGTAACTATCAGGTATCATAGCGATGATGACGACTGCCACAATTCAGACACGAACACGGGTGCAAGCGTGCCTATTCAAGTCGACATACAAAACTGAAGTAGTACAAATCCGTGCATGACTGAGAAATGTAATACCGACATTATAGAACTGGTGTGATTTGTTTCAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1018881 lncRNA upstream 9898 47044856 ~ 47045118 (+) True G895516
TU1018882 lncRNA upstream 10722 47043994 ~ 47044294 (+) True G895517
TU1018854 lncRNA upstream 63573 46991163 ~ 46991443 (+) True G895492
TU1018853 lncRNA upstream 64472 46990102 ~ 46990544 (+) True G895491
TU1018849 lncRNA upstream 69656 46985044 ~ 46985360 (+) True G895487
TU1018892 lncRNA downstream 536 47056116 ~ 47056523 (+) True G895527
TU1018987 lncRNA downstream 66947 47122527 ~ 47122815 (+) True G895617
TU1018991 lncRNA downstream 74441 47130021 ~ 47130240 (+) True G895621
TU1019003 lncRNA downstream 98078 47153658 ~ 47153895 (+) True G895632
TU1019018 lncRNA downstream 135126 47190706 ~ 47190938 (+) True G895647
XM_036990514.1 mRNA upstream 20511 47031429 ~ 47034505 (+) True LOC110533128
XM_021618788.2 mRNA upstream 38804 47009349 ~ 47016212 (+) True LOC110534113
XM_021618784.2 mRNA upstream 92473 46916136 ~ 46962543 (+) True LOC110534111
XM_036990512.1 mRNA upstream 160025 46888000 ~ 46894991 (+) True LOC110534110
XR_002475084.2 mRNA upstream 187412 46864047 ~ 46867604 (+) True LOC110534109
XM_021618795.2 mRNA downstream 68289 47123869 ~ 47127973 (+) False LOC110534117
XM_036990517.1 mRNA downstream 68736 47124316 ~ 47127973 (+) True LOC110534117
XM_036990522.1 mRNA downstream 76555 47132135 ~ 47151344 (+) False LOC110511048
XM_036990523.1 mRNA downstream 76586 47132166 ~ 47151344 (+) False LOC110511048
XM_036990518.1 mRNA downstream 76591 47132171 ~ 47151344 (+) False LOC110511048
TU1018880 other upstream 12233 47040514 ~ 47042783 (+) True G895515
TU1017607 other upstream 354476 46627292 ~ 46700540 (+) True G894437
TU1017351 other upstream 937073 46116285 ~ 46117943 (+) True G894204
TU1017187 other upstream 1153205 45901045 ~ 45901811 (+) True LOC110534056
TU1017032 other upstream 1411460 45622257 ~ 45643556 (+) False LOC110534042
TU1018992 other downstream 86464 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other downstream 86464 47142044 ~ 47151549 (+) True LOC110511048
TU1019024 other downstream 147345 47202925 ~ 47204624 (+) False G895652
TU1019023 other downstream 147666 47203246 ~ 47204624 (+) False G895652
TU1019025 other downstream 147666 47203246 ~ 47204842 (+) True G895652

Expression Profile