RNA id: TU1019031


Basic Information

Item Value
RNA id TU1019031
length 665
RNA type TUCP
GC content 0.61
exon number 1
gene id G895658
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47216407 ~ 47217071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATGGGGGTCTCCTGGGGGTGGGGCTCAGCCGGCTCCTCGGGGTGGAGTCTGGTTGTGACGGACAGCGGGACGACGGTCGTCTTCTCCGGACCGTGTGGTTTGGTGGTGCTCTTCTCTAGAGCGTCTCTTATGGCCGTGCTGCTAGCCACAGGGGACGGAGCGATGGTCCTGTGGAAAGGGGACGGTGAATAGATGCTAGGGACAGGGGACGGAGTGGAGCTTGGGACAGGGGACGGTGAGACACTGGGGACAGGGGACGGAGTggagctggggacaggggacGGTGTCACACTGGGAACAGGGGACGTTTTGACAGAGCTAGGGACTTGAGAGGGCGTGATGGTCTTCTCTGAAGCGCGCGCTTTGGCAGTGCTCTTCTCTAGAGCGTCTCGGATGGCATTTCTGCGGGGGACAGGAGACGGTGTGACAATGCCGGGGACCGGAGACACTGTTACGGTGCTGGGGAGAGGGGACGGTGTGACGGTAGGGACAGGGGATGGTGTGGAGCTGAGGACAGGGGATGGTGTGATGGTGAAGTTCTTGGGGACAGGGGACAGCGCGGTATCTAGCCTCGGGTTGGCAGTGCCAGCTCTTGAGTGAGGTCTGCAGGAAGAGAGGACTGGCTTCTCCTCTGGAGCATCGACCTCTAAATCCTGCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019029 lncRNA upstream 3959 47212248 ~ 47212448 (+) True G895656
TU1019028 lncRNA upstream 5178 47211011 ~ 47211229 (+) True G895655
TU1019018 lncRNA upstream 25469 47190706 ~ 47190938 (+) True G895647
TU1019003 lncRNA upstream 62512 47153658 ~ 47153895 (+) True G895632
TU1018991 lncRNA upstream 86167 47130021 ~ 47130240 (+) True G895621
TU1019033 lncRNA downstream 812 47217883 ~ 47218117 (+) True G895660
TU1019036 lncRNA downstream 7207 47224278 ~ 47224517 (+) True G895663
TU1019084 lncRNA downstream 75096 47292167 ~ 47343570 (+) True G895709
TU1019093 lncRNA downstream 84780 47301851 ~ 47306718 (+) True G895717
TU1019062 lncRNA downstream 165995 47383066 ~ 47384234 (+) True G895687
XM_036990522.1 mRNA upstream 65063 47132135 ~ 47151344 (+) False LOC110511048
XM_021618798.2 mRNA downstream 42170 47259241 ~ 47374572 (+) False LOC110534120
XM_021618799.2 mRNA downstream 42171 47259242 ~ 47374572 (+) False LOC110534120
XM_021618800.2 mRNA downstream 93837 47310908 ~ 47374572 (+) True LOC110534120
LOC110533129 mRNA downstream 192316 47409387 ~ 47420005 (+) True LOC110533129
XR_005034163.1 mRNA downstream 203756 47420827 ~ 47426481 (+) False LOC118936698
TU1019025 other upstream 11565 47203246 ~ 47204842 (+) True G895652
TU1019024 other upstream 11783 47202925 ~ 47204624 (+) False G895652
TU1019023 other upstream 11783 47203246 ~ 47204624 (+) False G895652
TU1018992 other upstream 64858 47142044 ~ 47151549 (+) False LOC110511048
TU1018993 other upstream 64858 47142044 ~ 47151549 (+) True LOC110511048
TU1019490 other downstream 692645 47909716 ~ 47910975 (+) True G896043
TU1019687 other downstream 1018111 48235182 ~ 48235616 (+) True G896217
TU1020802 other downstream 1459186 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 2060631 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 2213328 49430399 ~ 49432958 (+) True LOC110534189

Expression Profile