RNA id: TU1019084



Basic Information


Item Value
RNA id TU1019084
length 236
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G895709
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47292167 ~ 47343570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcaagggggccgaatactttcgcaaggcactgtatatctctctggtcacccccaaaaccaattctttctttggccgcctctccttccagttctctgctgccaatgactggaacgaactacaaaaatctctgaaactggaaacacatctccctcactagctttaagcaccaactgtcagagcagctcacagattactgcacctgtacatagcccacctataatttagcccaaacaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1019036 lncRNA upstream 67650 47224278 ~ 47224517 (+) True G895663
TU1019033 lncRNA upstream 74050 47217883 ~ 47218117 (+) True G895660
TU1019029 lncRNA upstream 79719 47212248 ~ 47212448 (+) True G895656
TU1019028 lncRNA upstream 80938 47211011 ~ 47211229 (+) True G895655
TU1019018 lncRNA upstream 101229 47190706 ~ 47190938 (+) True G895647
TU1019062 lncRNA downstream 39496 47383066 ~ 47384234 (+) True G895687
TU1019101 lncRNA downstream 45271 47388841 ~ 47404280 (+) True G895724
TU1019279 lncRNA downstream 179322 47522892 ~ 47545264 (+) True G895845
TU1019259 lncRNA downstream 181124 47524694 ~ 47541415 (+) False G895839
TU1019257 lncRNA downstream 219964 47563534 ~ 47577294 (+) False G895839
XM_036990522.1 mRNA upstream 140823 47132135 ~ 47151344 (+) False LOC110511048
LOC110533129 mRNA downstream 65817 47409387 ~ 47420005 (+) True LOC110533129
XR_005034163.1 mRNA downstream 77257 47420827 ~ 47426481 (+) False LOC118936698
XR_005034164.1 mRNA downstream 77257 47420827 ~ 47426481 (+) True LOC118936698
XM_036933223.1 mRNA downstream 83048 47426618 ~ 47849279 (+) False LOC110533130
XM_036933224.1 mRNA downstream 83048 47426618 ~ 47849279 (+) False LOC110533130
TU1019031 other upstream 75096 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 87325 47203246 ~ 47204842 (+) True G895652
TU1019024 other upstream 87543 47202925 ~ 47204624 (+) False G895652
TU1019023 other upstream 87543 47203246 ~ 47204624 (+) False G895652
TU1018993 other upstream 140618 47142044 ~ 47151549 (+) True LOC110511048
TU1019490 other downstream 566146 47909716 ~ 47910975 (+) True G896043
TU1019687 other downstream 891612 48235182 ~ 48235616 (+) True G896217
TU1020802 other downstream 1332687 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 1934132 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 2086829 49430399 ~ 49432958 (+) True LOC110534189

Expression Profile