RNA id: TU1019101


Basic Information

Item Value
RNA id TU1019101
length 1386
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G895724
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47388841 ~ 47404280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGTCTACTATTTTTTATTGTCTTAGTATGAAGAGCATCCTGAAAAGACGGGGAGGTGTGGCTTTCTTGGCCACAGTTGTTTCTTGGCCATTGTTGATTACCGTAAGGTGAAACAAAAATACGTCTGGGAAGGCCATTGTGTGGGTTTCTCAACAACAAATCACTGACACTTCCTCCGTCTGTGGAGCAGCTGTGTTATCCACGGCTCTTCTTCTCTGGTTCCCAGGCTGACCCTCAGAGGTCTTCAAATGGACTACACGCATACGTCAATTTCTTTAGGTCAAAACAAAACATATACACAGGTTGACAAATATACAGCTGTTTAACATTGGTTTTCTATCTGATTGAGTAAAAAGACTAGATACACATCAATATATTAATGCAGGCCTATGTCCCCGAAGAGAGTTTGCACGGAGGTTGTCCTTTAGCCACCATACATATTAGATTGATGGGGTGGGCGGATGTAGGAGGAGCAAGCATGTCACAATCATGGCAGTTCCCTAAGAAGGATGGTTCTCATCATTGACTAGAGCCTATGCTATGAGAATGCATGTACAATATTGACGGCATTCAAGCCAAGATAAATGCATATAGCTCAAACTACAGAAAAAACACAAACTCTTTCAGCAACGCATCCAAGTCCACATAACCAAACGCAAAAGCCACCACACAGCTCTTATGGCCTCTCCAGAACAACAGCAGTTTAGACCGTAACACATGCATGGTCTGATCAGTGACAGAACAGTGAATATCGGTCAATTCATGTCTCTGTTGTCACTAAACAGAAGGCATTGCCTCCTTTCTCATCTACTGCTATTGTGGGCTCAATGCATGTCATGATAAGGGGTTTGAAGAGTGATGGTGTGAGCCATGTGAACAGCCAGAACTCTATGTATATGCTACAGACTAGTAAAACAGACATTCATCAATGAAGTCAttaaacccactgggcacagacgtccaTTCAACGTCTATTCCGCGTTGGTGCCGCGTCATTTGGTTGAAATggcgtggaaacaacattgaaaAGGGCGTGGAATCGACATTGGTTCTACCAATGTGCGCCCAGTGGGAAGTGCTTTAAGAAATGATTGTCCGTTTCCCTCAGGCATATCTAATGGTGCTTATTgtggggtggtggggtcagtGGTGAAGAAGGGAACTGTGCGGAGTGGACGCACAGCTTATTTGAGTTGCTCGTCGGGGGCAGGGATCTTCTCCAGGCTGGGCTCCACGCCCCAGATCTCCCGGGCGTACTGGGAAATGGTGCGGTCGCTGGAGAATTTACCACAGCCTGCAATGTTATGGATCACCATCTTGGTCCATTCCTTGGGATTCTTGTACAGTACATGATGTACTCCAATGACTTCCAGTAATCAACACCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1019062 lncRNA upstream 4607 47383066 ~ 47384234 (+) True G895687
TU1019084 lncRNA upstream 45271 47292167 ~ 47343570 (+) True G895709
TU1019093 lncRNA upstream 82123 47301851 ~ 47306718 (+) True G895717
TU1019036 lncRNA upstream 164324 47224278 ~ 47224517 (+) True G895663
TU1019033 lncRNA upstream 170724 47217883 ~ 47218117 (+) True G895660
TU1019279 lncRNA downstream 118612 47522892 ~ 47545264 (+) True G895845
TU1019259 lncRNA downstream 120414 47524694 ~ 47541415 (+) False G895839
TU1019257 lncRNA downstream 159254 47563534 ~ 47577294 (+) False G895839
TU1019254 lncRNA downstream 186868 47591148 ~ 47597056 (+) True G895839
TU1019300 lncRNA downstream 201108 47605388 ~ 47616102 (+) True G895856
XM_021618798.2 mRNA upstream 14269 47259241 ~ 47374572 (+) False LOC110534120
XM_021618799.2 mRNA upstream 14269 47259242 ~ 47374572 (+) False LOC110534120
XM_021618800.2 mRNA upstream 14269 47310908 ~ 47374572 (+) True LOC110534120
XM_036990521.1 mRNA upstream 237497 47132180 ~ 47151344 (+) False LOC110511048
LOC110533129 mRNA downstream 5107 47409387 ~ 47420005 (+) True LOC110533129
XR_005034163.1 mRNA downstream 16547 47420827 ~ 47426481 (+) False LOC118936698
XR_005034164.1 mRNA downstream 16547 47420827 ~ 47426481 (+) True LOC118936698
XM_036933223.1 mRNA downstream 22338 47426618 ~ 47849279 (+) False LOC110533130
XM_036933224.1 mRNA downstream 22338 47426618 ~ 47849279 (+) False LOC110533130
TU1019031 other upstream 171770 47216407 ~ 47217071 (+) True G895658
TU1019025 other upstream 183999 47203246 ~ 47204842 (+) True G895652
TU1019024 other upstream 184217 47202925 ~ 47204624 (+) False G895652
TU1019023 other upstream 184217 47203246 ~ 47204624 (+) False G895652
TU1018993 other upstream 237292 47142044 ~ 47151549 (+) True LOC110511048
TU1019490 other downstream 505436 47909716 ~ 47910975 (+) True G896043
TU1019687 other downstream 830902 48235182 ~ 48235616 (+) True G896217
TU1020802 other downstream 1271977 48676257 ~ 48677065 (+) True G897244
TU1021453 other downstream 1873422 49277702 ~ 49281952 (+) False LOC110534184
TU1021565 other downstream 2026119 49430399 ~ 49432958 (+) True LOC110534189

Expression Profile