RNA id: TU1021470


Basic Information

Item Value
RNA id TU1021470
length 289
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G897851
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49287037 ~ 49287325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccttttaaaagctttgcttTCACCCAGCCAGCCTGTCTGCACGATCTATGGTGTCCGTATGGTCCTAAATCCAGCCGTATAAAACCATAAAACAGCCTACCCAACTGCTCTGAGgtgtctgcatggtcctaaagcacaacAGTGTCGCATTGGGGGGACAAAAAGGCCATTTTAGAATATGGGGGAGGTCCTGTCCCCAGTGAACTggtgctgagtaagaacttaaacctgaactcactcataaaaacagcagctcgaGGACATCCCGAGttgtgcagtggtctaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1021467 lncRNA upstream 1622 49285214 ~ 49285415 (+) True G897848
TU1021455 lncRNA upstream 4327 49282018 ~ 49282710 (+) False LOC110534184
TU1021456 lncRNA upstream 4444 49282018 ~ 49282593 (+) True LOC110534184
TU1021454 lncRNA upstream 5085 49277702 ~ 49281952 (+) False LOC110534184
TU1021444 lncRNA upstream 51456 49235024 ~ 49235581 (+) True G897827
TU1021473 lncRNA downstream 4074 49291399 ~ 49291656 (+) True G897854
TU1021476 lncRNA downstream 6151 49293476 ~ 49293675 (+) True G897857
TU1021477 lncRNA downstream 6423 49293748 ~ 49293954 (+) True G897858
TU1021492 lncRNA downstream 13568 49300893 ~ 49301198 (+) True G897864
TU1021481 lncRNA downstream 15026 49302351 ~ 49309094 (+) False G897859
XM_021618902.2 mRNA upstream 4291 49277626 ~ 49282746 (+) False LOC110534184
XM_021618898.2 mRNA upstream 60456 49218199 ~ 49226581 (+) True LOC110534180
XM_021618894.2 mRNA upstream 74907 49189943 ~ 49212130 (+) False LOC110534179
XM_021618897.2 mRNA upstream 74907 49189971 ~ 49212130 (+) True LOC110534179
XM_021618892.2 mRNA upstream 105277 49160630 ~ 49181760 (+) True LOC110534178
XM_021618906.2 mRNA downstream 139460 49426785 ~ 49431860 (+) False LOC110534189
XM_021618908.2 mRNA downstream 163543 49450868 ~ 49472529 (+) False rgs14b
XM_021618909.2 mRNA downstream 164219 49451544 ~ 49472529 (+) False rgs14b
XM_021618907.2 mRNA downstream 164221 49451546 ~ 49472529 (+) True rgs14b
XM_021618910.2 mRNA downstream 317908 49605233 ~ 49618387 (+) False cnot6a
TU1021453 other upstream 5085 49277702 ~ 49281952 (+) False LOC110534184
TU1020802 other upstream 609972 48676257 ~ 48677065 (+) True G897244
TU1019687 other upstream 1051421 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 1376062 47909716 ~ 47910975 (+) True G896043
TU1019031 other upstream 2069966 47216407 ~ 47217071 (+) True G895658
TU1021565 other downstream 143074 49430399 ~ 49432958 (+) True LOC110534189
TU1022627 other downstream 747665 50034990 ~ 50037685 (+) True G898894
TU1025780 other downstream 3162893 52450218 ~ 52475365 (+) True G901849
TU1025781 other downstream 3245403 52532728 ~ 52535650 (+) True LOC110534253
TU1026857 other downstream 4228782 53516107 ~ 53519788 (+) False G902707

Expression Profile