RNA id: TU1022627


Basic Information

Item Value
RNA id TU1022627
length 2417
RNA type TUCP
GC content 0.46
exon number 3
gene id G898894
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50034990 ~ 50037685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcgacactgactgcatttgggtcttacctgaaacgcgATACACTTGAAGTCAATATTACATGAATCACTCTTTATTttcagcaagctggagaggtcaGTCAGTTGGATGCAGAAATTACCAGTCTGAAGTGAGCTCTATACATAGTGACTTATATGCGGCCACATAAAAACCAACATAAACATGATTCATCGGATTGATTCCAGCATATGACTGGCGCCATCTCCTATCTTAATTCATAGAACATATTCTGGGCGTTCTGCCAGATGGTCCTAAGGAAAGGGTCATGACTCCCTCATATCTTTACCCAGCACTGGCAGGAACCATGGATTGCTTATGACACAAAGacaaaattaacattttcaaTGCTATCTCATCACTACATATAATGATCCTGGTTTACTGTCCCTCCTATTAGAATCATGGTTTTACACACTGCACAACTATACAAATGGAATAGTCTTCTTCCTTTACAAGTGACAGTACAGACACAGTATCATAATATTTCTGAGAAAAAAATCTGAACACAAAGCATGCATGATATTAAAAAAGCTATGTAATATATGATTgtttgtacaaaaaaaaaatcttattacaccaaacatatacacacattgACCTAAATACAGTGAAACTGTGAAGAGGAAGCTGTATCATGAACCTAGCACAATCTCTCATAGTCAAATACATTCAAAagacacgcgcacgcacacacgcacgcatgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaactgaatcTCTTGATCAAATCCATGTCAAATCCATGTAAAAACAGTTCCTAGTTCCTCCTCTGTGTCAGTGATACACAGTGCAACATTTTAGCTAAAAGTTTCAGTGTAACAAAATCCTACCTTGCCAATAGCATACTACGGATACAATAAGGCCCTCAGTACTGCACTACAAATATGAGCCCACATACTGTGCAAAACTATAGATTTTTTTCTCAAGTACTTGAAAACCAAGACCCTTCAAGTTTAAATTTACAGTACGGTGCTGGAGTCTTTCTAGGAGATTCCTCTCCTAGTTTTTGTGTCAGACAGCAAACAAACACGCTAATGTTCAGGATAGCGATACCTCTCCTCTTCTTTTCCTTCATTTTTTCTGCCCTCCATTCAATCAGGCAGGTGAAGAAATCTCTCTCAGACGTAGTCCTTCCTGACGTATCCCGCTGCGCCCCCGCTGTGAGGGGCGGAGTAGGCCATGCCGGGGGGCTTgtacctcttctcctccctggGGGAGCAGGAGCTGCACAGCATAGCCCCTCCGATCAGTAGCAGGGCTGCAGCCCCCCAGCCAATGTAGAGAGAGGCCCCCAGCTCCCTCTTCTGTGCGTTGATCAGCAGGGGGTTGTAGAAGTCTTGGATGATGGTGCTGGCCGACCAGGAGACAGGGATGAGAACTAGGATCCCGGCCAGGATGAAGAAAATTCCGGAGATGATCATGACTTTAGCTTTGGAGGGTTCATCATCGATGCAGTTGGTGCACTTGGCTCCGACGATGGAGACCATCACCCCTAGAATCCCCAGGGTGATTGCGATGATTGTCATGGCTCTGGCGGCTTGTAGGTCCTGGGGCAAGGCCAGGAGGGAGTCGTAGACCTTACACTGCATCTGGCCCGTACTCTGGGTCACACAGTTCATCCACAGGCCCTCCCATATGGTCTGGGATGTGATAATGTTGGCTCCGATATAGGCCGTCACCTTCCACAAGGGCAAAGCACAGACCACGATGCCCAGGATGAATCCTATGACGCCCAGGGCAATCCCCACAATCTCCATGCCCATCGACATGCTGGCTCCCTGGACTGGCTCTCTCCAACACCTGCCCTTCCTGGAGGAACGAGGAAGTGACTTAACTAAGAAGTTCTTCGAACCTGCTGAGATTCTCAACTTCCAGAATCCAGCATACAAATTCTAGAACTAACAGAGGATTCAGTCAAGCTGAGATTCTAATCAAAGACAGAAGATTCTGTTCCAAATCTGGAACTTCTTAGTGGTTCTTTGTGTTCAGTGTTCTTCCTTGtactcctctctcgctctctcgctctctcgctctctctttctcgctctgtgtgtgggggtgtgatgTAGCTAAGTGATGCTGCCACATAATCAGAGATCCTTTATACCCCAGGGTAGgcaggagagaaggaagggagcagTCACCTGGTGATGATGTCTCCGTATGGTAGAACAGGTGTCTTCAAGCTCTTCACAAAAACAATGACCTGCCCATAGATGCTACTGAGAGAAGTGGATGgatgggggaggtggaggagggaggagaagcatgagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1022602 lncRNA upstream 15026 49996407 ~ 50019964 (+) True G898871
TU1022358 lncRNA upstream 45262 49988650 ~ 49989728 (+) True LOC110534202
TU1022418 lncRNA upstream 69270 49965488 ~ 49965720 (+) True G898692
TU1022375 lncRNA upstream 131917 49902857 ~ 49903073 (+) True G898649
TU1022371 lncRNA upstream 140948 49893820 ~ 49894042 (+) True G898645
TU1022739 lncRNA downstream 55858 50093543 ~ 50093990 (+) True G899003
TU1022740 lncRNA downstream 56532 50094217 ~ 50094594 (+) True G899004
TU1022745 lncRNA downstream 60457 50098142 ~ 50098370 (+) True G899009
TU1022787 lncRNA downstream 94396 50132081 ~ 50132304 (+) True G899050
TU1022789 lncRNA downstream 95470 50133155 ~ 50133366 (+) True G899052
XM_021618924.2 mRNA upstream 20353 49999645 ~ 50014637 (+) True LOC110534204
XM_021618922.2 mRNA upstream 45250 49968144 ~ 49989740 (+) False LOC110534202
XM_036933304.1 mRNA upstream 80983 49811429 ~ 49954007 (+) False LOC110534200
XM_036933305.1 mRNA upstream 80983 49811429 ~ 49954007 (+) False LOC110534200
XM_036933306.1 mRNA upstream 80983 49811429 ~ 49954007 (+) False LOC110534200
XM_021618926.2 mRNA downstream 41480 50079165 ~ 50080809 (+) True LOC110534206
XM_021618927.2 mRNA downstream 49584 50087269 ~ 50088380 (+) True LOC110534207
XM_021618928.2 mRNA downstream 52631 50090316 ~ 50091208 (+) True LOC110534208
XR_005034170.1 mRNA downstream 80781 50118466 ~ 50123210 (+) False LOC118936703
XR_005034169.1 mRNA downstream 80781 50118466 ~ 50124859 (+) False LOC118936703
TU1021565 other upstream 602032 49430399 ~ 49432958 (+) True LOC110534189
TU1021453 other upstream 753038 49277702 ~ 49281952 (+) False LOC110534184
TU1020802 other upstream 1357925 48676257 ~ 48677065 (+) True G897244
TU1019687 other upstream 1799374 48235182 ~ 48235616 (+) True G896217
TU1019490 other upstream 2124015 47909716 ~ 47910975 (+) True G896043
TU1025780 other downstream 2412533 52450218 ~ 52475365 (+) True G901849
TU1025781 other downstream 2495043 52532728 ~ 52535650 (+) True LOC110534253
TU1026857 other downstream 3478422 53516107 ~ 53519788 (+) False G902707
TU1027004 other downstream 3632435 53670120 ~ 53674811 (+) True G902840
TU1027123 other downstream 3939746 53977431 ~ 53979255 (+) False helt

Expression Profile