RNA id: TU1023281


Basic Information

Item Value
RNA id TU1023281
length 252
lncRNA type intronic
GC content 0.45
exon number 1
gene id G899518
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50322836 ~ 50323087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATTGTCAAGGCTTTCACAAGGCATTCATAAAGTACTACATAAATGTGTTATAGGTAAAGGGGGATATAGAAGGTCAGTCATTACATgtggtgtcatcggatggggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgttggggggctagggtcagtttgttatatctggagtacttctcctgtcctatccggtgtcctgtgtgaatttaagtatgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1023219 lncRNA downstream 62464 50246298 ~ 50260372 (-) True LOC110534213
TU1023191 lncRNA downstream 124914 50197698 ~ 50197922 (-) True G899434
TU1023180 lncRNA downstream 137821 50184810 ~ 50185015 (-) True G899423
TU1023179 lncRNA downstream 138111 50184444 ~ 50184725 (-) True G899422
TU1023174 lncRNA downstream 156122 50166471 ~ 50166714 (-) True G899417
TU1023289 lncRNA upstream 8314 50331401 ~ 50351308 (-) True G899524
TU1023292 lncRNA upstream 33253 50356340 ~ 50356801 (-) True G899527
TU1023298 lncRNA upstream 41476 50364563 ~ 50364817 (-) True G899533
TU1023350 lncRNA upstream 142380 50465467 ~ 50465873 (-) True LOC110534220
TU1023389 lncRNA upstream 182553 50505640 ~ 50505849 (-) True G899616
XM_036933322.1 mRNA downstream 62401 50246854 ~ 50260435 (-) False LOC110534213
XM_036933319.1 mRNA downstream 273904 50045056 ~ 50048932 (-) True LOC110533140
XM_021618925.2 mRNA downstream 285157 50035811 ~ 50037679 (-) True LOC110534205
XM_036933303.1 mRNA downstream 527250 49772382 ~ 49795586 (-) True LOC110534197
XM_036933302.1 mRNA downstream 527251 49772382 ~ 49795585 (-) False LOC110534197
XR_002475097.2 mRNA upstream 18029 50341116 ~ 50352843 (-) False slc25a35
XM_021618935.2 mRNA upstream 18029 50341116 ~ 50353286 (-) True slc25a35
XR_005034174.1 mRNA upstream 23435 50346522 ~ 50347574 (-) False LOC118936704
XR_005034173.1 mRNA upstream 23435 50346522 ~ 50349995 (-) True LOC118936704
NM_001124692.1 mRNA upstream 64861 50387948 ~ 50399688 (-) True tp53
TU1023178 other downstream 140048 50182396 ~ 50182788 (-) True G899421
TU1023166 other downstream 165934 50156192 ~ 50156902 (-) True G899409
TU1021210 other downstream 1438761 48881727 ~ 48884075 (-) True LOC110534172
TU1020355 other downstream 2333760 47987761 ~ 47989076 (-) True G896841
TU1019905 other downstream 3089790 47230804 ~ 47233046 (-) True LOC110534118
TU1023349 other upstream 142380 50465467 ~ 50471878 (-) False LOC110534220
TU1023512 other upstream 397899 50720986 ~ 50721603 (-) True G899727
TU1023530 other upstream 420071 50743158 ~ 50750233 (-) True G899739
TU1023888 other upstream 647676 50970763 ~ 50981750 (-) False G900070
TU1023889 other upstream 647676 50970763 ~ 50981750 (-) True G900070

Expression Profile