RNA id: TU1023473


Basic Information

Item Value
RNA id TU1023473
length 295
lncRNA type intronic
GC content 0.33
exon number 1
gene id G899691
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50637673 ~ 50637967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaatatactgtacacataAAGCAATTTAATTCGACTAAAGTATGCAATTTAACCGATAAGCAtgaccagtcaaatgtatttccataaatgaataggctaaaaagcattatttcgCAATGGGATTTTTTCTTCTCCTGGCCAATTTTATTTATCTgcttttcaacaaaaaaaatatcgGACAAAAGCCTAACGGCAACTACATTGTTTATAAATACTGAAAGTAAATATCAGTTTGGGTGTCAGGCGTGTCCTTATAGACTTTTGCAGTTGAGGAGCGTGTAAATGTGTTAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1023472 lncRNA downstream 776 50636608 ~ 50636897 (-) True slc25a15b
TU1023412 lncRNA downstream 18815 50553714 ~ 50618858 (-) False G899636
TU1023411 lncRNA downstream 18815 50618420 ~ 50618858 (-) True G899636
TU1023399 lncRNA downstream 26608 50521567 ~ 50611065 (-) True G899626
TU1023393 lncRNA downstream 128327 50509098 ~ 50509346 (-) True G899620
TU1023498 lncRNA upstream 42214 50680181 ~ 50680853 (-) True G899713
TU1023497 lncRNA upstream 48239 50686206 ~ 50686725 (-) True G899712
TU1023501 lncRNA upstream 52994 50690961 ~ 50691185 (-) True G899716
TU1023480 lncRNA upstream 58473 50696440 ~ 50696737 (-) True G899698
TU1023478 lncRNA upstream 59636 50697603 ~ 50697754 (-) True G899696
XM_036933327.1 mRNA downstream 625 50626130 ~ 50637048 (-) False slc25a15b
XM_036933326.1 mRNA downstream 1257 50626130 ~ 50636416 (-) False slc25a15b
XM_021618953.2 mRNA downstream 2001 50626130 ~ 50635672 (-) False slc25a15b
XM_021618952.2 mRNA downstream 2739 50626130 ~ 50634934 (-) False slc25a15b
XM_036933328.1 mRNA downstream 3510 50626130 ~ 50634163 (-) False slc25a15b
XR_002475099.2 mRNA upstream 83723 50721690 ~ 50767775 (-) False LOC110534228
XR_002475100.2 mRNA upstream 98196 50736163 ~ 50767820 (-) False LOC110534228
XM_036933332.1 mRNA upstream 315201 50953168 ~ 50961942 (-) False si:ch211-215c18.3
XM_036933331.1 mRNA upstream 315201 50953168 ~ 50962186 (-) True si:ch211-215c18.3
XM_021618973.2 mRNA upstream 819129 51457096 ~ 51559838 (-) False LOC110534238
TU1023349 other downstream 165795 50465467 ~ 50471878 (-) False LOC110534220
TU1023178 other downstream 454885 50182396 ~ 50182788 (-) True G899421
TU1023166 other downstream 480771 50156192 ~ 50156902 (-) True G899409
TU1021210 other downstream 1753598 48881727 ~ 48884075 (-) True LOC110534172
TU1020355 other downstream 2648597 47987761 ~ 47989076 (-) True G896841
TU1023512 other upstream 83019 50720986 ~ 50721603 (-) True G899727
TU1023530 other upstream 105191 50743158 ~ 50750233 (-) True G899739
TU1023888 other upstream 332796 50970763 ~ 50981750 (-) False G900070
TU1023889 other upstream 332796 50970763 ~ 50981750 (-) True G900070
TU1024669 other upstream 817533 51455500 ~ 51455942 (-) True G900807

Expression Profile