RNA id: TU1023520


Basic Information

Item Value
RNA id TU1023520
length 208
lncRNA type read_through
GC content 0.43
exon number 1
gene id G899735
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50734024 ~ 50734231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctgatggcacagctggcgctgcagtacagcgcccttaaccactgcgccacccgggaggcctcaaatcatagacttaattaaaacataataacacacagaaatacgagccttagtttccggattcaaccatattaatgacctatcttgaaaacaagacgtttattctttcagtgaaatacggaaccgttccgtattttatctaacgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1023519 lncRNA downstream 65 50733696 ~ 50733959 (-) True G899734
TU1023514 lncRNA downstream 9931 50723740 ~ 50724093 (-) True G899729
TU1023510 lncRNA downstream 16835 50716892 ~ 50717189 (-) True G899725
TU1023477 lncRNA downstream 32305 50701058 ~ 50701719 (-) True G899695
TU1023478 lncRNA downstream 36270 50697603 ~ 50697754 (-) True G899696
TU1023479 lncRNA upstream 1447 50735678 ~ 50736193 (-) True LOC110534228
TU1023521 lncRNA upstream 4650 50738881 ~ 50739139 (-) True G899736
TU1023522 lncRNA upstream 5097 50739328 ~ 50739544 (-) True G899737
TU1023523 lncRNA upstream 5458 50739689 ~ 50739909 (-) True G899738
TU1023532 lncRNA upstream 16399 50750630 ~ 50750841 (-) True G899740
XM_036933327.1 mRNA downstream 96976 50626130 ~ 50637048 (-) False slc25a15b
XM_036933326.1 mRNA downstream 97608 50626130 ~ 50636416 (-) False slc25a15b
XM_021618953.2 mRNA downstream 98352 50626130 ~ 50635672 (-) False slc25a15b
XM_021618952.2 mRNA downstream 99090 50626130 ~ 50634934 (-) False slc25a15b
XM_036933328.1 mRNA downstream 99861 50626130 ~ 50634163 (-) False slc25a15b
XR_002475100.2 mRNA upstream 1932 50736163 ~ 50767820 (-) False LOC110534228
XM_036933332.1 mRNA upstream 218937 50953168 ~ 50961942 (-) False si:ch211-215c18.3
XM_036933331.1 mRNA upstream 218937 50953168 ~ 50962186 (-) True si:ch211-215c18.3
XM_021618973.2 mRNA upstream 722865 51457096 ~ 51559838 (-) False LOC110534238
XM_021618974.2 mRNA upstream 722865 51457096 ~ 51559902 (-) True LOC110534238
TU1023512 other downstream 12421 50720986 ~ 50721603 (-) True G899727
TU1023349 other downstream 262146 50465467 ~ 50471878 (-) False LOC110534220
TU1023178 other downstream 551236 50182396 ~ 50182788 (-) True G899421
TU1023166 other downstream 577122 50156192 ~ 50156902 (-) True G899409
TU1021210 other downstream 1849949 48881727 ~ 48884075 (-) True LOC110534172
TU1023530 other upstream 8927 50743158 ~ 50750233 (-) True G899739
TU1023888 other upstream 236532 50970763 ~ 50981750 (-) False G900070
TU1023889 other upstream 236532 50970763 ~ 50981750 (-) True G900070
TU1024669 other upstream 721269 51455500 ~ 51455942 (-) True G900807
TU1026566 other upstream 2167963 52902194 ~ 52928402 (-) False G902519

Expression Profile