RNA id: TCONS_00003804


Basic Information

Item Value
RNA id TCONS_00003804
length 1392
lncRNA type lincRNA
GC content 0.43
exon number 3
gene id XLOC_001941
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10178101 ~ 10195602 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTCTTGCACTGAGCATCAACCCTAAGCAGCGGAAGTGGACACTTCTGTCTCAACATACACATACAAGAGACATAAGTCAAATCTGTTGCTGCCCGTCCCAGAAAACCACCATCAGCATCCTGCCGGACATACAAGAGGCTAAACCATGATCAAGCGCAAGCTGAGCTTCAAGTGGTTTGGTAGCCTCACAAACCTCCGGCGGAAATCAGATGCGCAGAAAGATGACGAATCAGTCAAAGAAATGTCCACCGACGACATGGGCATGCATCCACGAAGCCCGAGCTATGCCACCTCTAGTGAAATGTACACACACATGGGCACCATGCCGCGCCATTCTAAGAAGGACAAAAACTCGAAAAAGAGCAAGACCAAAGACAAGGCCAACCTCACTCGGAGCCAAAGCTTGAGACCAGACCATGTGGTTGAATCTCCTCTCCTTAGTATGCTTTCTGGAAAGGGGCTGGAGGTTCTGGAAAACCCCATTATTGAAGACAAGACGGCTTACATCCAGAATCGAGACCTTCCACCTCCTCCATGTGTGGATGGACACTCAACAAGGCTGGAAGATGAAAATAAGAAGCTTGAAGTAAACTTCAAACATGTTGATGCATCGAATGCATGTCTGGGAGCTTCAATAGAACTATGCGTGAGCCAAGAGTCAACGGTCCAGCCAGTGTTGCCCAAGAAGAGACTTAAAGAAGGAGACAAACTGATGAAGGACACTGAGGAGCTCAAGGAGGACAATAACTTGATCCAGTTGCCTCAGAAGACTGGCAACCAGATGGAGAAGAAGATAGCAGTAGAAGAAGATGCTAATATAGTGTGGAACTATAAACTTGACGGCCAAGAAGAGAAGGAGTTAAACAGTGAACTGGACATCACAGAAAACCAGGGAGAATATGTGGAGGTAAggctgttttcttttaaacaagaaGTCAATGGGTAAAGTGTGTTTAAACTAGACAATCTCTCATTGTTAATGAGAAGAATCTGGAAGGAATTTCCTTAAGATCTGTCTGGTCTTTGATTTAGGCTATATttttagactttctccagacagcATGCTGAATATGGCTATTTCATGCTTAATTAGGCAAAATCCCTGTATTCATTACCTAAAAGCACCATTTTAGATGTAATAAGAAATTAATCTAATGAGGTCTTTTGAAATGTGCTGATTTGGTACAAATTAATGTCCTTTCTAGCCCTGTTCTTACTTGCAGCCATTAAGATATTAGATTCTCCATTTAATTGCTGTGTAGTAAACTCTGTCACCTCAAGATGGCGCTGCGAACTGGCTTTGAATTCTTGAAGAAAAAGTAGAGAAAGaaacttcaaaacatttttttcattttctgtcggCATAGTTTCTGATTTATTAGAAATCTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194616

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005685 lncRNA upstream 282558 9890691 ~ 9895543 (+) True XLOC_001939
TCONS_00005831 lncRNA upstream 342655 9823197 ~ 9835446 (+) True XLOC_001938
TCONS_00005830 lncRNA upstream 516205 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005687 lncRNA downstream 92546 10288148 ~ 10295748 (+) False XLOC_001943
TCONS_00005832 lncRNA downstream 92692 10288294 ~ 10295789 (+) True XLOC_001943
TCONS_00003816 lncRNA downstream 533393 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00003822 lncRNA downstream 606103 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005833 lncRNA downstream 621312 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003801 mRNA upstream 367504 9697097 ~ 9810597 (+) True XLOC_001936
TCONS_00003799 mRNA upstream 522281 9595575 ~ 9655820 (+) False XLOC_001935
TCONS_00003798 mRNA upstream 528366 9595575 ~ 9649735 (+) False XLOC_001935
TCONS_00003800 mRNA upstream 533382 9601587 ~ 9644719 (+) False XLOC_001935
TCONS_00003797 mRNA upstream 612427 9561066 ~ 9565674 (+) True XLOC_001934
TCONS_00003805 mRNA downstream 14853 10210455 ~ 10274162 (+) True XLOC_001942
TCONS_00003806 mRNA downstream 117422 10313024 ~ 10326025 (+) False XLOC_001944
TCONS_00003807 mRNA downstream 117442 10313044 ~ 10325944 (+) True XLOC_001944
TCONS_00003808 mRNA downstream 156083 10351685 ~ 10380131 (+) True XLOC_001945
TCONS_00003811 mRNA downstream 190833 10386435 ~ 10564968 (+) False XLOC_001946
TCONS_00003803 other upstream 264924 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003802 other upstream 452210 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003791 other upstream 829595 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 1297975 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 1309206 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003821 other downstream 606103 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 627153 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003827 other downstream 777208 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003830 other downstream 920252 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003841 other downstream 1303091 11498693 ~ 11498809 (+) True XLOC_001959

Expression Profile

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