RNA id: TU1028253


Basic Information

Item Value
RNA id TU1028253
length 237
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G903956
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 54470090 ~ 54470326 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctataacatgtagtgtcattttgttagataaaacccttctttatatcccaaaaagtctgtttagttggcgccatcgatttgagtaatccactcgttcaacatgcatagAAAGGAATCCAAGAATttaccgctaaactttgttaaaacaagtcaaaatatgtttcgaTTGACTCCTCAgacaccctaaaatgtaatcaaactataatatttcgtacagaaagaagtatgttcaatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1028252 lncRNA downstream 752 54469083 ~ 54469338 (-) True G903955
TU1028236 lncRNA downstream 22821 54447059 ~ 54447269 (-) True G903940
TU1028230 lncRNA downstream 30267 54439536 ~ 54439823 (-) True G903934
TU1028228 lncRNA downstream 32345 54437518 ~ 54437745 (-) True G903932
TU1028168 lncRNA downstream 124653 54335351 ~ 54345437 (-) False usp53b
TU1028384 lncRNA upstream 5780 54476106 ~ 54493725 (-) True LOC110534304
TU1028444 lncRNA upstream 103068 54573394 ~ 54576436 (-) True G904133
TU1028480 lncRNA upstream 167296 54637622 ~ 54637847 (-) True G904165
TU1028500 lncRNA upstream 192115 54662441 ~ 54662672 (-) True G904184
TU1028527 lncRNA upstream 205130 54675456 ~ 54676066 (-) True G904204
XM_021619082.2 mRNA downstream 3001 54464629 ~ 54467089 (-) True enam
XM_021619079.2 mRNA downstream 36072 54421742 ~ 54434018 (-) False synpo2b
XM_021619080.2 mRNA downstream 36072 54421742 ~ 54434018 (-) True synpo2b
XM_021619075.2 mRNA downstream 52138 54402866 ~ 54417952 (-) True myoz2b
XM_021619078.2 mRNA downstream 52147 54402866 ~ 54417943 (-) False myoz2b
XM_021619084.2 mRNA upstream 5957 54476283 ~ 54482073 (-) False LOC110534304
XM_036934582.1 mRNA upstream 40662 54510988 ~ 54516812 (-) True LOC110534932
XM_021617230.1 mRNA upstream 54454 54524780 ~ 54527686 (-) True scpp7
XM_036989358.1 mRNA upstream 187011 54657337 ~ 54659796 (-) True LOC118966636
XM_021619087.2 mRNA upstream 198585 54668911 ~ 54671854 (-) True odam
TU1027952 other downstream 366685 54082166 ~ 54103405 (-) False cfap97
TU1027862 other downstream 586317 53879544 ~ 53883773 (-) True G903619
TU1027855 other downstream 591301 53872239 ~ 53878789 (-) True casp3a
TU1026566 other downstream 1541688 52902194 ~ 52928402 (-) False G902519
TU1024669 other downstream 3014148 51455500 ~ 51455942 (-) True G900807
TU1029404 other upstream 809173 55279499 ~ 55280341 (-) True G904991
TU1029594 other upstream 1057199 55527525 ~ 55527827 (-) True LOC110534325
TU1029596 other upstream 1058540 55528866 ~ 55529192 (-) True G905177
TU1031204 other upstream 2249057 56719383 ~ 56751990 (-) True G906663
TU1033065 other upstream 2987914 57458240 ~ 57890617 (-) False G908286

Expression Profile