RNA id: TCONS_00003806


Basic Information

Item Value
RNA id TCONS_00003806
length 962
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_001944
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10313024 ~ 10326025 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCCTGAGGATGTGAGATTACTTCCGGGTTTTACAACAACATGGCAGCGCCCTTAGGTCTGCATCTGGAGTTTGGAGGAGGAGCTGAGCTGCTATTTGATGGGGTCAAGAATCATCATGTGACACTGCCTGACCAATCAAATCCCTGGGACATGAAGCAGCTGCTGGCGTGGATCCGAGGGAACATGCTAAAGGAGCGCCCAGAGCTTTTTATGCAGGGCGACACTGTtagaccTGGGATTCTGGTATTGATTAACGACGCAGACTGGGAACTGATGGGAGAATTGGACTACCAACTTCAGGACAAGGATAACGTTGTCTTTATTTCCACACTTCATGGAGGCTAAACGACTCTAAAAGATACACCGCACCCATACAGGAGCCCCTTCACAATTCAAAAGGTCAAATATTCGATGATCCATCAACAGCGGCATTGGTGACTGATTTAAGTTCCAGTTGTGGACTTCTCGACCAATCGAGACTTGTGAAAAGCTATTTTAGCTATAAGTCTAAAGTGTATAATGTCGTTGGGAATCTGGCGTTGGAGGGACAGTTCACTGTCCCATGTACCTTTCAGGAGTGTGGCGGGGTTACGATGGAGAGCAAGGGCTCATTAAGAAGGTCACCCTGTCTAGCCAGTGTCCAGATGGATTCTCTTGAGACATGGTGGACCGATTGCCCCATGTCAAATGGCTCCGTTATAATTTTCTTTTCGATGCCTTTTCAGTTCTATCTACCTTTTATACATAAAAGTGCTTTTATGTATAATCTGAATAAATTGTggaaatattatgttttttttaatagcactAATGCCATATTAAATGTTGTCCAAGTTTAAATTCACATTAGATGTTttagtattaaaatgtaattatcccTTCTATGCAGTACCTTAATGTTTTATATAGCATAAGCTTATCAATATAACttttgataatatatttttaatatttttacat

Function

GO:

id name namespace
GO:0034227 tRNA thio-modification biological_process
GO:0002098 tRNA wobble uridine modification biological_process
GO:0032447 protein urmylation biological_process
GO:0008033 tRNA processing biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031386 protein tag molecular_function

KEGG:

id description
ko04122 Sulfur relay system
ko03016 Transfer RNA biogenesis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-091204-300 Predicted to enable protein tag. Predicted to be involved in protein urmylation. Predicted to act upstream of or within tRNA thio-modification. Predicted to be located in cytosol. Predicted to be active in nucleus. Orthologous to human URM1 (ubiquitin related modifier 1).

Ensembl:

ensembl_id ENSDART00000142895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005832 lncRNA upstream 17235 10288294 ~ 10295789 (+) True XLOC_001943
TCONS_00005687 lncRNA upstream 17276 10288148 ~ 10295748 (+) False XLOC_001943
TCONS_00003804 lncRNA upstream 117422 10178101 ~ 10195602 (+) False XLOC_001941
TCONS_00005686 lncRNA upstream 125766 10178168 ~ 10187258 (+) True XLOC_001941
TCONS_00005685 lncRNA upstream 417481 9890691 ~ 9895543 (+) True XLOC_001939
TCONS_00003816 lncRNA downstream 402970 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00003822 lncRNA downstream 475680 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005833 lncRNA downstream 490889 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA downstream 490889 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003828 lncRNA downstream 654208 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00003805 mRNA upstream 38862 10210455 ~ 10274162 (+) True XLOC_001942
TCONS_00003801 mRNA upstream 502427 9697097 ~ 9810597 (+) True XLOC_001936
TCONS_00003799 mRNA upstream 657204 9595575 ~ 9655820 (+) False XLOC_001935
TCONS_00003798 mRNA upstream 663289 9595575 ~ 9649735 (+) False XLOC_001935
TCONS_00003800 mRNA upstream 668305 9601587 ~ 9644719 (+) False XLOC_001935
TCONS_00003808 mRNA downstream 25660 10351685 ~ 10380131 (+) True XLOC_001945
TCONS_00003811 mRNA downstream 60410 10386435 ~ 10564968 (+) False XLOC_001946
TCONS_00003810 mRNA downstream 60410 10386435 ~ 10564968 (+) False XLOC_001946
TCONS_00003809 mRNA downstream 60410 10386435 ~ 10564968 (+) False XLOC_001946
TCONS_00003812 mRNA downstream 61303 10387328 ~ 10561818 (+) True XLOC_001946
TCONS_00003803 other upstream 399847 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003802 other upstream 587133 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003791 other upstream 964518 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 1432898 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 1444129 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003821 other downstream 475680 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 496730 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003827 other downstream 646785 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003830 other downstream 789829 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003841 other downstream 1172668 11498693 ~ 11498809 (+) True XLOC_001959

Expression Profile

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