RNA id: TU1048167


Basic Information

Item Value
RNA id TU1048167
length 1941
RNA type TUCP
GC content 0.40
exon number 3
gene id G921673
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 70738540 ~ 70798813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cAAGTATCCACTTTTTTCCCCATGCATTACTCATTCTAACATGTCTGCATGTGATGTTGTTTCATAACGTCACACCGTGCTGACCTGTGCCCTCTCTGAACAGGTGCACTTCCTTGTCCATAATCCAACGGTAGATGGGGAACTGGCATGTGTCTCCCTCTGGCGTCGTCACGACAACCTTGGACGGGAACCAGGCGTCCTGGGGGAAGAGTGGGAGGGGCTGTTTGTCCAGCTCTATCAGCACCAGCGTGCCGAGGGAGGAGGGGCACACCACGTCGAATTCACGAGacgcctgcagagagagagagagagagatggaggaagtgagagatagatggagggaatgaaagaatgagatggagagagggagagagagagagaaaaagggaggggcagagagagtgagagagagcagaaccTGGACTGTGTGAGAAAGCAAATAACAAAGGCAAATATAACTAATCCTGGACTACCAGTATTCATGTCACATACACTATATGTGTATGAACATATTGGTGCGTTTGGGTGTGTTTTGAGCACAGTATTTGAAAAATGCAAATGGTAAGTCTTATTGAAGCTAGAATAATTTGTTGCTACATCCATATTTTGGACATATAAATTATATATACTCAtagattcttgaagaatataatttataattgcttagttcaactgtcgtacccaatCAGAACCCAATGATTGTAagcaatgtaaatgtaaacaaacactaagCTATAGccacaaaacatggttaaaagtaCACATTCTTCTATGATTTTGAGAATGGTGACATTTCTATaagcccatccctcagctttttaccaaaacagaggcggggtgcctctttgttattgtttcaattaaggattctagttTTAAAGAGAAATATCTCTTAGTACTGATAGGAGCATTACTGACTTACCGTGCCTTGATAGAAGCCTCCCTTCAAGCTAGTGAGCCACGTGCGCTTACTCTCTCCTTTCTCGCCAACCAGCTTGATGAAGACATTGTTCATCGTGGTGGCAGTTGCGATGTTGTGTGTGTACACAGTCACCTTGTATTTTGCCAttttgactctgaaaaacactacGATAGGCTTATCTGCACACACTGAGACTGCACAGCAAACAACAGTTCATTCAATGTAGACAGTGCAAACATTTCTGCAAATATTAAGACTTGCATGATATCCATTCATCCATTTTaataacaaaatattttttttagggTATTCTTGCTAGGATAACAAACTTGCAAAGCCACAGTTATTGCATACACACAGCATGTAGGGGGACATTTTGCACGAGCAAATGATAGTGAGCAAATGGACCATAGACAGGAGTTATATGCTTATTCaatgtgcatattatccaaaatacccattacattgtgtgcatattatccaaaatacccattgcattgtgtgcatattatccaaaatacccattgcattgtgtgcatattatccaaaatacccattgcattgtgtgcatattatccaaaatacccattacattgtgtgcatattatccaaaatacccattgtattgtgtgcatattatccaaaatacccattgcattgtgtgcatattatccaaaatacccattgcattgtgtgcattgCATTCATGGCTCAGTACACTGATCTCTGGTTAAATAATAGCCTCCTCATTCTACACATAGTTGAAGAAAACAAAACATGAAATCACGCTGCACATCAAGTTTAACTGTATTTTCTGCACACATCTGTGCTCTTTTGCTTGATGAAAATGTCTCCCATATTATCAAAAATAAAACATTCAGAGTTCCCTTACCTGATTGGTTGATAGTTTGTAGTACCCTGTTAACTGTGCCTTAATGATCACCTTCCCTACTGCTCGTTTTATACCTGGCTGGAGGTGTGTGTAGAACCATACGTACATATCTGGGTGTTACTTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1048150 lncRNA downstream 26379 70711884 ~ 70712456 (-) True G921658
TU1048148 lncRNA downstream 29159 70709454 ~ 70709676 (-) True G921656
TU1048146 lncRNA downstream 33575 70705049 ~ 70705260 (-) True G921654
TU1048141 lncRNA downstream 39478 70699041 ~ 70699357 (-) True G921649
TU1048140 lncRNA downstream 39948 70698685 ~ 70698887 (-) True G921648
TU1048174 lncRNA upstream 3371 70744690 ~ 70813088 (-) False G921676
TU1048182 lncRNA upstream 8786 70750105 ~ 70819298 (-) True G921679
TU1048201 lncRNA upstream 60240 70801559 ~ 70829984 (-) True G921697
TU1048175 lncRNA upstream 71175 70812494 ~ 70813088 (-) True G921676
TU1048235 lncRNA upstream 156425 70897744 ~ 70912998 (-) True LOC118936741
XM_036933810.1 mRNA downstream 62479 70652361 ~ 70676356 (-) True LOC110534563
XM_036933809.1 mRNA downstream 62770 70652361 ~ 70676065 (-) False LOC110534563
XM_036933803.1 mRNA downstream 212208 70503337 ~ 70526627 (-) True LOC110498629
XM_036933802.1 mRNA downstream 212300 70503337 ~ 70526535 (-) False LOC110498629
XM_036933801.1 mRNA downstream 235615 70497924 ~ 70503220 (-) True LOC110497323
XM_036933821.1 mRNA upstream 156411 70897730 ~ 70956757 (-) False LOC118936741
XM_036933823.1 mRNA upstream 156411 70897730 ~ 70956757 (-) False LOC118936741
XM_036933825.1 mRNA upstream 156411 70897730 ~ 70956757 (-) False LOC118936741
XM_036933826.1 mRNA upstream 156411 70897730 ~ 70956757 (-) False LOC118936741
XM_036933818.1 mRNA upstream 156411 70897730 ~ 70956758 (-) False LOC118936741
TU1047862 other downstream 209373 70527538 ~ 70529462 (-) False G921389
TU1047578 other downstream 383690 70331183 ~ 70355145 (-) True LOC110516757
TU1047366 other downstream 643010 70092861 ~ 70095825 (-) False G920994
TU1048176 other upstream 5368 70746687 ~ 70816302 (-) True G921677
TU1048419 other upstream 275177 71016496 ~ 71016929 (-) True G921899
TU1048387 other upstream 339587 71080906 ~ 71081512 (-) True LOC110533203
TU1048993 other upstream 854171 71595490 ~ 71597145 (-) True LOC118936934
TU1049024 other upstream 920456 71661775 ~ 71663134 (-) True LOC118936746

Expression Profile