RNA id: TU1048176


Basic Information

Item Value
RNA id TU1048176
length 2500
RNA type TUCP
GC content 0.43
exon number 3
gene id G921677
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 70746687 ~ 70816302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAAGCCATGGTCAAAGATATCCTTGATCCAGTTCTGTAGTTCCTGGTCTTCCCGGACCTCTGAGTCACTCTTGTAATAGAAACCAATCACTCCCTCTACAAACCTATACGGAAGGCGACAACGGAAGAACGAAGAAGAAAGAAGATATCATATCTATGTAGAGCTATGCTTTCACTGTAGATTCTACCAGCGGATGATACTGTACTACCACCATGTAGGTCTGCTCTACTGCTCTGTCGTAGCCTACCTGTGGATGATGTCCCACAGCTTGAGTCCATCATCCCTGTAGTAGTTGTTGGGGACTGACTCCAGACCTCGTGCAGTGATGTCTTCCGGCATACAGAGGGAGCTGTAGGTCAATGAGGCCACAGATCTCCTCAGGATCTCAATCATCCCCTCTCCGCCCGAAGCAGCAAACTACAACGTCACTTAAAGTTATTTGATTACATAATTCTGTAACATTATAATGTACTTTAACTAAGCTGCAATATTACACTGGTTCTATGAGAGATAGTGAACCTACCAGCAAGTATGTTGACCAGGAGGGCCAAATGACCATACATGGGGGTACTGTAGGTTCACTACAAGACATACAACCGCATGTACGCTGACTCTGACACAACTTCCATGCATGTGTGattcctaatatggacaccacaCACTTCTATGGAAACAGTCCACTCAGTAGCCTACCTGAGTGAAAACTCCTTCATCAGCTATTAGAAATGCCCGGGCCAAGAGGTTGATCTGGAGGGTGTAGCGGGTGTGTGGAATCAGAAGCTAAAGCAGTAAACCAgggtggagagaaggatggatggtCAACAATCCCAAGAGAGAAACTGGCATTAGTAAGGACAGATTGGAAATAGGTGTATTATACTTTCATGTGTCATTATCCTCTGTCATGGTCcatacacaccaagacagtcgggaagagggcacgacaatgcctattcccccacaGGAGAACGAATagatttgccatgggtcctcagatcatcaaaaagttctacagctgcaccattgagagcatcctgaccagttgcatcactgcctggtatggcaactgctcggcatccgactggggccaagcttcctgccatccaggacctctatactaggcggtgtcagaggaaggccccaaaaattgtcaaagactcgagtcacccaagtcatagactgttcactctattaccgcatggcaagcagtactggagcgccaagtctaggtccaaaaggctcattaacagcttctacccataAGCCATAAGATTGCTGAACAATCAATTAAATGGCCACTATTTATATTGACCTCACCCCTCACTTTAGCACTGCCTAAATGTtcaaattacctcaattacctcgagtAACCTGTattcctgcacattgactcggtaccacctgtatataacctcgttattgttattttatagtgttacttttttaaacttaattttatttagtaaatattttcttaactctatttacttaaaactgcattgttgtaagtaagcagttcacggtaaggtctacagctgttgtattcggcgcatgtgacaaataaaatgttattttatttgatccTCGGAGCACTAACTGGACATGCTATGctatattatgttatgatgtattctGTTATATATGCTATGATATAATATATTATGCTATCTTATCTTATGCTTTATTATGTTACGTTATTCTATGCTATTTTAtgctatattattatttatttatttatatatagttttttaccccctttttttgttagtagttactgtcttgtctcatcgctacaactcctgtacgggctcgggagagacgaaggtcgagagtcatgcgtcttacgaaacacaacccaaccaagccgcactgcttcctaacacagcacgcatccaacccggaagccatgTTATGCTATgatatattatgttatgttatgctatattatgttatgctatattatgttatgctatgctatattatgttatgatatgttatgctatattatgttatgctaggctatattatgttatgctatgctaatattatgttatgttatgctaatattatgttatgctatgctatgctcAGTGGAGGCTGcggaggggaggacagctcataataatggctggaatggagtgaatggaagccatgtgtttgataacattccactccagccattaccactagcccgtcctccccaattagggTTCCACCAACCGCCTGGGTTTATGCTATGTTATGCTATGCTGTACTGTGTTATGTACCTTGTAGAGGGGGTGCACCATGGGCATGTTGCGCAGCAGTGCTACAGCGAACACCTCAGCCAGGAGGTGAGTGCGCAGCAGGTGGACGTTGAGCTGGTGCTCTTGAAAGTCAGCGCTCCTCACAAAGATCTTGGCCAGGAGCCAGTCATACTCAGAGTCAGTAGGAAGGAAGATGGGGTTGTCTTTAGCAGGCTTCTGCTtcaactgtggagagagagagtgttagggAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1048150 lncRNA downstream 34231 70711884 ~ 70712456 (-) True G921658
TU1048148 lncRNA downstream 37011 70709454 ~ 70709676 (-) True G921656
TU1048146 lncRNA downstream 41427 70705049 ~ 70705260 (-) True G921654
TU1048141 lncRNA downstream 47330 70699041 ~ 70699357 (-) True G921649
TU1048140 lncRNA downstream 47800 70698685 ~ 70698887 (-) True G921648
TU1048235 lncRNA upstream 81442 70897744 ~ 70912998 (-) True LOC118936741
TU1048255 lncRNA upstream 89852 70906154 ~ 70906456 (-) True G921751
TU1048263 lncRNA upstream 115831 70932133 ~ 70932594 (-) True G921759
TU1048278 lncRNA upstream 143299 70959601 ~ 70959863 (-) True G921774
TU1048389 lncRNA upstream 151637 70967939 ~ 70968777 (-) True G921869
XM_036933810.1 mRNA downstream 70331 70652361 ~ 70676356 (-) True LOC110534563
XM_036933809.1 mRNA downstream 70622 70652361 ~ 70676065 (-) False LOC110534563
XM_036933803.1 mRNA downstream 220060 70503337 ~ 70526627 (-) True LOC110498629
XM_036933802.1 mRNA downstream 220152 70503337 ~ 70526535 (-) False LOC110498629
XM_036933801.1 mRNA downstream 243467 70497924 ~ 70503220 (-) True LOC110497323
XM_036933821.1 mRNA upstream 81428 70897730 ~ 70956757 (-) False LOC118936741
XM_036933823.1 mRNA upstream 81428 70897730 ~ 70956757 (-) False LOC118936741
XM_036933825.1 mRNA upstream 81428 70897730 ~ 70956757 (-) False LOC118936741
XM_036933826.1 mRNA upstream 81428 70897730 ~ 70956757 (-) False LOC118936741
XM_036933818.1 mRNA upstream 81428 70897730 ~ 70956758 (-) False LOC118936741
TU1048167 other downstream 5368 70738835 ~ 70741319 (-) True G921673
TU1047862 other downstream 217225 70527538 ~ 70529462 (-) False G921389
TU1047578 other downstream 391542 70331183 ~ 70355145 (-) True LOC110516757
TU1047370 other downstream 650862 70092861 ~ 70095825 (-) False G920994
TU1048419 other upstream 200194 71016496 ~ 71016929 (-) True G921899
TU1048387 other upstream 264604 71080906 ~ 71081512 (-) True LOC110533203
TU1048993 other upstream 779188 71595490 ~ 71597145 (-) True LOC118936934
TU1049024 other upstream 845473 71661775 ~ 71663134 (-) True LOC118936746
TU1049077 other upstream 929513 71745815 ~ 71747884 (-) False LOC110534950

Expression Profile