RNA id: TU1048278


Basic Information

Item Value
RNA id TU1048278
length 263
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G921774
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 70959601 ~ 70959863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttgacAAAGGGGGAGGGGGTGGCTTTAGCACGGACCCATACAGGAAGCCAACGGATAGGAATTCCCTGTTACGCGGAAACAGCTTCCACCCTACACCCCCGAAAAAGAGTCTCCTATCTGCCAATACAGTTGCATATGCAGGATCTGTAGTACACAGAGTGACTATGACAAGCGTACTGTCTGGATGAGCGCTTCAGACAACGGTGTTGTCCAGAGTATTTGCTGCACGACGCACTGGACAGTTACAAAAATATGACCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1048263 lncRNA downstream 27007 70932133 ~ 70932594 (-) True G921759
TU1048235 lncRNA downstream 46603 70897744 ~ 70912998 (-) True LOC118936741
TU1048255 lncRNA downstream 53145 70906154 ~ 70906456 (-) True G921751
TU1048201 lncRNA downstream 129617 70801559 ~ 70829984 (-) True G921697
TU1048182 lncRNA downstream 140303 70750105 ~ 70819298 (-) True G921679
TU1048389 lncRNA upstream 8076 70967939 ~ 70968777 (-) True G921869
TU1048406 lncRNA upstream 39526 70999389 ~ 70999938 (-) True G921886
TU1048417 lncRNA upstream 55753 71015616 ~ 71016076 (-) True G921897
TU1048418 lncRNA upstream 56346 71016209 ~ 71016422 (-) True G921898
TU1048383 lncRNA upstream 103364 71063227 ~ 71063678 (-) True G921863
XM_036933818.1 mRNA downstream 2843 70897730 ~ 70956758 (-) False LOC118936741
XM_036933819.1 mRNA downstream 2843 70897730 ~ 70956758 (-) False LOC118936741
XM_036933820.1 mRNA downstream 2843 70897730 ~ 70956758 (-) False LOC118936741
XM_036933822.1 mRNA downstream 2843 70897730 ~ 70956758 (-) False LOC118936741
XM_036933824.1 mRNA downstream 2843 70897730 ~ 70956758 (-) False LOC118936741
XM_036933833.1 mRNA upstream 5529 70965392 ~ 71027387 (-) False LOC110497311
XM_036933831.1 mRNA upstream 5529 70965392 ~ 71027391 (-) False LOC110497311
XM_036933835.1 mRNA upstream 5529 70965392 ~ 71027428 (-) False LOC110497311
XM_036933834.1 mRNA upstream 5529 70965392 ~ 71027475 (-) False LOC110497311
XM_036933829.1 mRNA upstream 5529 70965392 ~ 71027476 (-) False LOC110497311
TU1048176 other downstream 143299 70746687 ~ 70816302 (-) True G921677
TU1048167 other downstream 218282 70738835 ~ 70741319 (-) True G921673
TU1047862 other downstream 430139 70527538 ~ 70529462 (-) False G921389
TU1047578 other downstream 604456 70331183 ~ 70355145 (-) True LOC110516757
TU1047378 other downstream 863776 70092861 ~ 70095825 (-) True G920994
TU1048419 other upstream 56633 71016496 ~ 71016929 (-) True G921899
TU1048387 other upstream 121043 71080906 ~ 71081512 (-) True LOC110533203
TU1048993 other upstream 635627 71595490 ~ 71597145 (-) True LOC118936934
TU1049024 other upstream 701912 71661775 ~ 71663134 (-) True LOC118936746
TU1049077 other upstream 785952 71745815 ~ 71747884 (-) False LOC110534950

Expression Profile