RNA id: TU1049001


Basic Information

Item Value
RNA id TU1049001
length 1177
lncRNA type read_through
GC content 0.41
exon number 3
gene id G922374
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71612119 ~ 71722343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACATAACTATTCTTATTTTCTTTCTGCCATTCTCTTAATTTTCTTCTTCATCTCAGTTTGTGTTTCTTCAATTCCTCACCTCCTATCAACCCTATTGGGAGAGAAGGTCCAAGGTCCCTCCCCTAGGATTGTATTCTCCAGTGTGTTTTGAGACAGTCTATAATACCATTATTTCACCTCCTTGGTGAGTTCATCTCTCATTTAAACCACTAGGTGGaatcatcacttaaccattcaggACTTTATCCAACTGAAGGGTTACATTTGATTTTGTGGGTCTTCTAAAGACCCCCACCATTGATTATGTTGTTACTAATTTGCTTTCGTGCCATTGTACTTTTGCTCACTCTATAGCTGAATATTGAGGCCTCTGTCTGTGTCTAGCTTTCTGCCAAAACCCACCGCCCAGCGTCTGTGAGGAAAGGTGAGAAAAGGGACTGAGGGtgatagcgagacagagagagacagtgtctgTTTTTCTCTAAAACAAGGGCAGATTTGCATACTGCTGAGACAGTGTCTGTTTTTCTCTAAAACAAGGGCAGCTTTGCATACTGCTGAGACAGTGTCTGTTTTTCTCTAAAACAAGGGCAGATTTGCATACTGCTGAGACAGCGTCTGTTTTTCTCTAAAACAAGGGCAGATTTGCATACTGCTGAGACAGGTTCTGTTTTTCTCTAAAACAAGGGCAGATTTGCATACTGCTGAGACAGGTTCTGTTTTTCTCTAAAACAAGGGCAGATTTGCATACTGCTGAGACAGGTTCTGTTTTTCTCTAAAACAAGGGCAGATTTGCATACTGCTGAGACAGTGCCTGTTTTTCTCTAAAACAAGGGCAGATTTGCATACTGCTGAGACAGTGCCTGTTTTTCTCTAAAACAAGGGCAGATTTGCATACTGCTGAGACAGTGCCTGTTTTTCTCTAAAACAAGGGCAGATTTGCATACTGCTGAGACAGGTTCTCAGAAACCTTGTGTTAAGAATAACTTTAGCTGCACATGCAGGTTTTGACATAGGAGATCACACCATAAGGTCTGACCTCGGGTATATAAGATGGCGTCTTTCTTTTGTTCGGGGCAGAACTCAGGAGAGACATCAGTTGTATGTCTGATGTTTGATCTTTGACTTCTGTCTACGGCTGTCTTCTAATTATATATGCACATTTTAACTATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1048962 lncRNA downstream 69214 71539938 ~ 71542905 (-) True G922341
TU1048953 lncRNA downstream 89505 71522304 ~ 71522614 (-) True G922333
TU1048948 lncRNA downstream 112364 71498925 ~ 71499755 (-) True G922329
TU1048911 lncRNA downstream 202107 71406747 ~ 71410012 (-) True LOC110497179
TU1048883 lncRNA downstream 307425 71303881 ~ 71304694 (-) True G922285
TU1049070 lncRNA upstream 6951 71729294 ~ 71731134 (-) True LOC118936748
TU1049076 lncRNA upstream 23548 71745891 ~ 71747884 (-) False LOC110534950
TU1049079 lncRNA upstream 25293 71747636 ~ 71762259 (-) False LOC110514144
TU1049080 lncRNA upstream 25956 71748299 ~ 71748631 (-) True LOC110534950
TU1049048 lncRNA upstream 73852 71796195 ~ 71849264 (-) True G922407
XM_036989380.1 mRNA downstream 9529 71597215 ~ 71602590 (-) True LOC118966646
XM_036934587.1 mRNA downstream 15095 71595152 ~ 71597024 (-) False LOC118936934
XM_036933856.1 mRNA downstream 95753 71477149 ~ 71516366 (-) True LOC110515428
XR_005034221.1 mRNA downstream 135921 71472446 ~ 71476198 (-) True LOC110534568
XM_021573160.2 mRNA downstream 161360 71447845 ~ 71450759 (-) True LOC110497182
XM_036933866.1 mRNA upstream 6488 71728831 ~ 71734927 (-) False LOC118936748
XM_036933867.1 mRNA upstream 22425 71744768 ~ 71752698 (-) False LOC110534950
XR_005034224.1 mRNA upstream 22425 71744768 ~ 71752698 (-) False LOC110534950
XM_036933868.1 mRNA upstream 23497 71745840 ~ 71752698 (-) False LOC110534950
XR_002475140.2 mRNA upstream 37262 71759605 ~ 71761025 (-) True LOC110534519
TU1048993 other downstream 14974 71595490 ~ 71597145 (-) True LOC118936934
TU1048387 other downstream 530607 71080906 ~ 71081512 (-) True LOC110533203
TU1048419 other downstream 595190 71016496 ~ 71016929 (-) True G921899
TU1048176 other downstream 795817 70746687 ~ 70816302 (-) True G921677
TU1048167 other downstream 870800 70738835 ~ 70741319 (-) True G921673
TU1049077 other upstream 23472 71745815 ~ 71747884 (-) False LOC110534950
TU1049088 other upstream 40118 71762461 ~ 71763920 (-) True LOC110514144
TU1049956 other upstream 1183234 72905577 ~ 72906292 (-) False G923192
TU1049957 other upstream 1183234 72905577 ~ 72925734 (-) False G923192
TU1051061 other upstream 1907799 73630142 ~ 73631970 (-) True G924041

Expression Profile