RNA id: TU1050303



Basic Information


Item Value
RNA id TU1050303
length 228
lncRNA type intronic
GC content 0.40
exon number 1
gene id G923466
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73264600 ~ 73264827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTCAAGTAGGACACATGAGGCCAACAGGCCTGATTCCTACTGCAGGTAAATCCCCCTTCCATAAAGGGTGTAAATCTCTGACACTTTAAGTGCTCTCTCATAGGAATGGAATTTAATTCAAGCAAATTCTCAAATATGTTTTACCATGTTTTACAGCTGTCTAATATGATTCAGTACCACCGTTCattcttcagtgtgtgtgtatctctctctctgtgtgtgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1050261 lncRNA upstream 64193 73200160 ~ 73200407 (+) True G923429
TU1050260 lncRNA upstream 65063 73199319 ~ 73199537 (+) True G923428
TU1050256 lncRNA upstream 69268 73195109 ~ 73195332 (+) True G923424
TU1050254 lncRNA upstream 71621 73192697 ~ 73192979 (+) True G923422
TU1050253 lncRNA upstream 71941 73192410 ~ 73192659 (+) True G923421
TU1050311 lncRNA downstream 16389 73281216 ~ 73281778 (+) True G923471
TU1050323 lncRNA downstream 31399 73296226 ~ 73296890 (+) True G923482
TU1050328 lncRNA downstream 39413 73304240 ~ 73304896 (+) True G923487
TU1050330 lncRNA downstream 46430 73311257 ~ 73311551 (+) True G923489
TU1050463 lncRNA downstream 58593 73323420 ~ 73729275 (+) True G923586
trnak-uuu-5 mRNA upstream 126958 73137570 ~ 73137642 (+) True trnak-uuu-5
trnat-ugu-35 mRNA upstream 127681 73136847 ~ 73136919 (+) True trnat-ugu-35
trnay-gua-2 mRNA upstream 291226 72973286 ~ 72973374 (+) True trnay-gua-2
XM_021619740.2 mRNA upstream 297178 72964993 ~ 72967422 (+) True LOC110534790
XM_036933912.1 mRNA upstream 370701 72884340 ~ 72893899 (+) True LOC110497276
XM_036933933.1 mRNA downstream 125804 73390631 ~ 73395864 (+) True LOC118936752
XM_036933940.1 mRNA downstream 142789 73407616 ~ 73418522 (+) False LOC118936754
XM_036933939.1 mRNA downstream 144502 73409329 ~ 73418522 (+) False LOC118936754
XM_036933941.1 mRNA downstream 144502 73409329 ~ 73418522 (+) True LOC118936754
XM_021619734.2 mRNA downstream 165162 73429989 ~ 73431835 (+) True LOC110534784
TU1050270 other upstream 49142 73214487 ~ 73215458 (+) True G923434
TU1050262 other upstream 61076 73200947 ~ 73203524 (+) True G923430
TU1049715 other upstream 391798 72867434 ~ 72872802 (+) True LOC118936484
TU1049819 other upstream 498381 72764442 ~ 72766219 (+) True G923075
TU1049704 other upstream 616422 72646509 ~ 72648178 (+) False LOC110497298
TU1050569 other downstream 219024 73483851 ~ 73680885 (+) True G923659
TU1051936 other downstream 1839790 75104617 ~ 75104970 (+) True G924772
TU1051952 other downstream 1922428 75187255 ~ 75188404 (+) False G924787
TU1051953 other downstream 1922656 75187483 ~ 75189231 (+) True G924787
TU1051995 other downstream 1977645 75242472 ~ 75243001 (+) True G924816

Expression Profile