RNA id: TU1051061



Basic Information


Item Value
RNA id TU1051061
length 1214
RNA type TUCP
GC content 0.43
exon number 2
gene id G924041
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73630142 ~ 73631970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGCTGAATGCTTTTCTTTATTGGTTTTAACAAAAGCTGCAATGCACACACGCCAATTCACTGGCAGAAGATATCTTAACAATCTAAGCAAACAATGTGGCCAACATTTATATCAGGACAGATCTGACAATCATATTTCCTGCATTTGTGGGAGGGAGCAACAATGGATGGGGAAACTAAGGGTTATCTACAATAGAACACAAAATGTCATAATTTGACAGCATGCAGAAAAGCTGTGTTGTTGGTTTAATTTTATTCTCCATGGAGTTGCTTAAACAAACTGCAATTCAGGTCACTTTTTTCTTTCTTAGTACTCTCCAGTTTGTAAACGACATCACACCAGAGGTCTTTCTTGTCTGTTCTCTTCAGCACCTCTTTAATTCTGAACACCTCGTAGGGAGGAATCAGCACCTCCTTCTCATGAGCCATCTGAGATGCGTACTCCCCCAGTGGGGCACCAAGGTAGGTGGTGATCTCAAAACAGGAGCGATTTCCAAAGTGTTTAGTGATTTTCTTGTCTAAAGAGCTCGACGTGAACTGTCCGAATCGCATTTCATCATATTGGACACCCTCGAAAGAGTCTTTAGATCCACGGAAGGTTTGGAAAGTCTTATTCTTGTTGTTCTTGTTCTTGTTCAGCATTCGTAAGGCATTGGCCAAAAAGAAGTGCAGGGAGTGGTACTTGAACGTAGTTTTGTAGCTCTCCTTTTGGGTACGAGTGGCAGCGTTGAATGACTTGTAAACGTTGGATGTTGCATTCACATACACCTGGATTGCCAGGGAATAGTTTTTAGACAGTTTTCCTTTTTTTGTGTAATGGTCCTCAGCAGCGGTCCAAGCCTGGTTGAAAtctttgttctctcctctctcttttggCAGGTAATAGTCATGCACCTTCCTGAGCATCTTCTCCTCACAGCCCTTGTAGGAGTCATCAACAGAGTCTGGAGCCATGTCTAAGGGGAAGTTGGATTTTGGATCATGCAGAGGGAGACTGACCATCTTGGAGTCCACACCCAAAATCCAAGCCAGGACGAATAACATCACAGTAAAGGTTAGGATCTTGTGTCTTGCCATGATGTCAAAATGTATTGGTCCAACGTCAACTTGTAATGGAGAGGAATTGTCTTTTAAGATACAGAATCAGCATTCAAATGTTCAACTTTCAGGGGGCCTTGTTATAACAGAGCTCTTGTGGTTATGTTCACAGTCCC

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1051005 lncRNA downstream 9933 73419086 ~ 73620209 (-) True G923987
TU1050999 lncRNA downstream 11143 73419086 ~ 73618999 (-) False G923987
TU1050896 lncRNA downstream 76897 73345827 ~ 73553245 (-) False G923929
TU1050902 lncRNA downstream 92560 73525563 ~ 73537582 (-) False G923929
TU1050941 lncRNA downstream 116018 73510748 ~ 73514124 (-) True G923957
TU1050890 lncRNA upstream 17296 73649266 ~ 73652051 (-) False G923929
TU1051069 lncRNA upstream 27734 73659704 ~ 73664391 (-) False G924048
TU1051070 lncRNA upstream 27734 73659704 ~ 73660038 (-) True G924048
TU1051079 lncRNA upstream 55545 73687515 ~ 73735066 (-) True G924057
TU1050903 lncRNA upstream 71302 73703272 ~ 73704977 (-) True G923929
XM_036933945.1 mRNA downstream 50717 73575963 ~ 73579425 (-) True LOC110534806
XM_036989385.1 mRNA downstream 60688 73566844 ~ 73569454 (-) True LOC118966650
XM_036933949.1 mRNA downstream 73360 73552065 ~ 73556782 (-) True LOC118936756
XM_036933954.1 mRNA downstream 106056 73522824 ~ 73524086 (-) True LOC118936759
XM_036933950.1 mRNA downstream 127314 73497645 ~ 73502828 (-) False LOC118936757
XM_036933944.1 mRNA upstream 17159 73649129 ~ 73651780 (-) False LOC118936371
XM_036933943.1 mRNA upstream 17159 73649129 ~ 73652039 (-) True LOC118936371
XM_036989386.1 mRNA upstream 26536 73658506 ~ 73668256 (-) True LOC118966651
XM_021619742.2 mRNA upstream 69649 73701619 ~ 73703121 (-) True LOC110534792
XM_036933955.1 mRNA upstream 102459 73734429 ~ 73735728 (-) True LOC110497274
TU1049957 other downstream 704408 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 723850 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 1866222 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 1882258 71745815 ~ 71747884 (-) False LOC110534950
TU1049024 other downstream 1967008 71661775 ~ 71663134 (-) True LOC118936746
TU1052402 other upstream 1285207 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 1305935 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 1421146 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 1652021 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 1860163 75492133 ~ 75494111 (-) True LOC110511405

Expression Profile