RNA id: TU1050754


Basic Information

Item Value
RNA id TU1050754
length 268
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G923817
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73927912 ~ 73932834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctgactacccattcaccccgtttcccacctgttccctttttccctctgattaggtccctatatctctctctgtttctgttcctgtccttgtcggattcttgtttgttgtgtttcatgcctgagccagactatcgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtctatctgagcctacctatgtttggttattaaagaagctctgtttaagttagttcgcttttgggtcctcattcacgcaccgtaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1050527 lncRNA upstream 108378 73764151 ~ 73819534 (+) True G923627
TU1050512 lncRNA upstream 119096 73808352 ~ 73808816 (+) True G923616
TU1050673 lncRNA upstream 138618 73784484 ~ 73789294 (+) True G923755
TU1050547 lncRNA upstream 191450 73661978 ~ 73736462 (+) False G923639
TU1050541 lncRNA upstream 192988 73734422 ~ 73734924 (+) True G923639
TU1050696 lncRNA downstream 111682 74044516 ~ 74063342 (+) True G923769
TU1050829 lncRNA downstream 133059 74065893 ~ 74066159 (+) True G923877
TU1050837 lncRNA downstream 152352 74085186 ~ 74086633 (+) True G923884
TU1050844 lncRNA downstream 159463 74092297 ~ 74110278 (+) True G923888
TU1050859 lncRNA downstream 186473 74119307 ~ 74119743 (+) True G923902
XM_036933962.1 mRNA upstream 17797 73860326 ~ 73910115 (+) False LOC110497264
XM_036933963.1 mRNA upstream 17797 73862540 ~ 73910115 (+) True LOC110497264
XM_036933961.1 mRNA upstream 68866 73847000 ~ 73859046 (+) True LOC110497270
XM_036933960.1 mRNA upstream 90991 73836107 ~ 73836921 (+) True LOC110497273
XM_036933959.1 mRNA upstream 109700 73814175 ~ 73818212 (+) False LOC110497272
XM_036933966.1 mRNA downstream 55106 73987940 ~ 74007711 (+) False LOC118936762
XM_036933967.1 mRNA downstream 55183 73988017 ~ 74007816 (+) True LOC118936762
XM_036933969.1 mRNA downstream 127485 74060319 ~ 74062933 (+) True LOC110534573
XM_036933974.1 mRNA downstream 440033 74372867 ~ 74400008 (+) False LOC110534587
XM_036933973.1 mRNA downstream 440034 74372868 ~ 74400008 (+) False LOC110534587
TU1050569 other upstream 247027 73483851 ~ 73680885 (+) True G923659
TU1050270 other upstream 712454 73214487 ~ 73215458 (+) True G923434
TU1050262 other upstream 724388 73200947 ~ 73203524 (+) True G923430
TU1049715 other upstream 1055110 72867434 ~ 72872802 (+) True LOC118936484
TU1049819 other upstream 1161693 72764442 ~ 72766219 (+) True G923075
TU1051936 other downstream 1171783 75104617 ~ 75104970 (+) True G924772
TU1051952 other downstream 1254421 75187255 ~ 75188404 (+) False G924787
TU1051953 other downstream 1254649 75187483 ~ 75189231 (+) True G924787
TU1051995 other downstream 1309638 75242472 ~ 75243001 (+) True G924816
TU1052075 other downstream 1490650 75423484 ~ 75466344 (+) True LOC110511403

Expression Profile