RNA id: TU1050837



Basic Information


Item Value
RNA id TU1050837
length 686
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G923884
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74085186 ~ 74086633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttttccattgcaaaacggTTTAACGTTTTCTTTGACATGCCCTAATGCATACGGCCCTGGTCTCCAACGTACCCTCTGGTGTGGGTGTGACACGGTTGACTTTGAGGAGGGGTCTGGGAGTCGGTgatgaggaggaagggagggagcacACATCTTTCCCCAGCACAGGCACCTCTGGGAGGGTGAAGACGATCTCATAACGATGCAGACTCCTCAGGAACCCtacCTTAACCAGGAAGTTCCCATCAGGCTCTGGGAGAGCAGGGATGGAAGAATCCTTGGCTTTGTCCTCACGGTGAACAGGGGAGCCCATGGCATCCTCGTCGTCAGGGAAACGCACGCTTCCTCCCTTTGAGGTCGACCCCTTCCTGCCTGTTGCCATGTCAATGTCAGGCCAGGAATGATGGATCACACTGTATCAGTCTGAATTTGTGATGTCATCATTACCCTCCTTCAGAGAACATGACAAGGAACAATgtaaggagatagagagagagggagaacaagagagatggagagagaaaaggggggagcAGATGAGGAATGAAAGAGGTGAAGAGTgaggtgaaagagggagagaaagagagaccaagTCACAATTTCTTTGTAAAGGTGACAGCTCCTCAACAACAGTTTCTTCTGTCTTCTGTCATTTTCTGCCAAAAAGTTCCCTCAGACTAAACCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1050829 lncRNA upstream 19027 74065893 ~ 74066159 (+) True G923877
TU1050696 lncRNA upstream 21844 74044516 ~ 74063342 (+) True G923769
TU1050754 lncRNA upstream 152352 73927912 ~ 73932834 (+) True G923817
TU1050527 lncRNA upstream 265652 73764151 ~ 73819534 (+) True G923627
TU1050844 lncRNA downstream 5664 74092297 ~ 74110278 (+) True G923888
TU1050859 lncRNA downstream 32674 74119307 ~ 74119743 (+) True G923902
TU1050860 lncRNA downstream 34710 74121343 ~ 74121551 (+) True G923903
TU1050865 lncRNA downstream 44318 74130951 ~ 74131398 (+) True G923908
TU1050878 lncRNA downstream 59019 74145652 ~ 74145963 (+) True G923919
XM_036933969.1 mRNA upstream 22253 74060319 ~ 74062933 (+) True LOC110534573
XM_036933967.1 mRNA upstream 77370 73988017 ~ 74007816 (+) True LOC118936762
XM_036933966.1 mRNA upstream 77475 73987940 ~ 74007711 (+) False LOC118936762
XM_036933962.1 mRNA upstream 175071 73860326 ~ 73910115 (+) False LOC110497264
XM_036933974.1 mRNA downstream 286234 74372867 ~ 74400008 (+) False LOC110534587
XM_036933973.1 mRNA downstream 286235 74372868 ~ 74400008 (+) False LOC110534587
XM_036933976.1 mRNA downstream 286236 74372869 ~ 74400008 (+) True LOC110534587
XM_036934589.1 mRNA downstream 542856 74629489 ~ 74633280 (+) True LOC118936935
LOC110498618 mRNA downstream 685099 74771732 ~ 74772542 (+) True LOC110498618
TU1050569 other upstream 404301 73483851 ~ 73680885 (+) True G923659
TU1050270 other upstream 869728 73214487 ~ 73215458 (+) True G923434
TU1050262 other upstream 881662 73200947 ~ 73203524 (+) True G923430
TU1049715 other upstream 1212384 72867434 ~ 72872802 (+) True LOC118936484
TU1049819 other upstream 1318967 72764442 ~ 72766219 (+) True G923075
TU1051936 other downstream 1017984 75104617 ~ 75104970 (+) True G924772
TU1051952 other downstream 1100622 75187255 ~ 75188404 (+) False G924787
TU1051953 other downstream 1100850 75187483 ~ 75189231 (+) True G924787
TU1051995 other downstream 1155839 75242472 ~ 75243001 (+) True G924816
TU1052075 other downstream 1336851 75423484 ~ 75466344 (+) True LOC110511403

Expression Profile