RNA id: TU1052249


Basic Information

Item Value
RNA id TU1052249
length 526
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G924995
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74652525 ~ 74653603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGAAGATGGAAGAATAGGAGTCAGACTATTTAGTATTTGTAGTGGAGATGAGTCTTCTATTAGACAGTGTAACATCATAGAAGAACCTGGTTTCTGTTATGGTGAATATTATCATCATGTGACCTGTTCAGAGTCTGTGCGGCTTGTGGGTGGATCTGGTTtctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgactttgaccggcaggatgcagaggtagtctgtagggatgttggctgtggggctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaaggtaatgagtcccttctcctggactgtgacacctcagacagagagaacaacacctgcctacctggtaatgctgttggactcacctgctcagagcctgatgatgtgaggctggtgggaggaggcagtcgctgtgctggtggagtggagtggtacgaccagggagagtggaggatTGTGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1052252 lncRNA downstream 1168 74646413 ~ 74651357 (-) True G924997
TU1051679 lncRNA downstream 88510 74563612 ~ 74564015 (-) True G924587
TU1051577 lncRNA downstream 167283 74399317 ~ 74485242 (-) True G924487
TU1051580 lncRNA downstream 248007 74398647 ~ 74404518 (-) True G924490
TU1051572 lncRNA downstream 260713 74305942 ~ 74391812 (-) True G924486
TU1052275 lncRNA upstream 25645 74679248 ~ 74770657 (-) True G925015
TU1052286 lncRNA upstream 35948 74689551 ~ 74731961 (-) False G925024
TU1052287 lncRNA upstream 35948 74689551 ~ 74690177 (-) False G925024
TU1052288 lncRNA upstream 35948 74689551 ~ 74732397 (-) True G925024
TU1052303 lncRNA upstream 52479 74706082 ~ 74796698 (-) False G925027
XM_036989387.1 mRNA downstream 538908 74112748 ~ 74113617 (-) True LOC118966653
XM_036933972.1 mRNA downstream 544114 74093187 ~ 74108411 (-) False LOC118936764
XM_036933971.1 mRNA downstream 544114 74093189 ~ 74108411 (-) True LOC118936764
XM_036933970.1 mRNA downstream 559877 74079315 ~ 74092648 (-) True LOC118936763
XR_002475145.2 mRNA downstream 573757 74068360 ~ 74078768 (-) True LOC110534571
XM_036933983.1 mRNA upstream 21177 74674780 ~ 74676826 (-) True LOC118936765
XR_005034230.1 mRNA upstream 42460 74696063 ~ 74707724 (-) True LOC118936766
XM_021573272.2 mRNA upstream 105086 74758689 ~ 74760648 (-) True LOC110497259
XM_036933982.1 mRNA upstream 112385 74765988 ~ 74768163 (-) True LOC110518241
XM_036933977.1 mRNA upstream 171583 74825186 ~ 74877445 (-) True LOC110511351
TU1051061 other downstream 1020555 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 1726791 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 1746233 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 2888605 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 2904641 71745815 ~ 71747884 (-) False LOC110534950
TU1052402 other upstream 263574 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 284302 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 399513 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 630388 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 838530 75492133 ~ 75494111 (-) True LOC110511405

Expression Profile