RNA id: TU1052269



Basic Information


Item Value
RNA id TU1052269
length 1055
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G925010
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74807646 ~ 74808854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAAAAAGAGCTGTGTTACACTTACAGCAttggtgacccacttgaatcaaaatgtaGCTAGATGTTTTCTAcaagttgtcctctaaccagtgatgtacacattattcccagattccatgtggtttttgagctgttagttttaacaggacaACCTCATCTCCCCACTCTCACGCAAATGATTTCAACATGATATCGATGAGGGATGAAAAATAAGTGTTGTGTTCCTTTGTTTAACGACCTCTAAATGTAAATGCATCTctccaaaatgtagctgactgtcttctgcaggttgtcctctaaccagggaggtaaaatatatctcccatttccatgtgtttttagttgtgttagtttcaacagcaccaacaacctgatttgtcctctaaccagggaggtcaaatatatctcccatttccatgtgtttttagttgtgttagtttcaacagcaccaacaacctgatttgtcctctaaccagggaggtaaaatatatctcccatttccatgtgtttttagttgtgttagtttcaacagcaccaacaacAGTATCACAAATGgtttctgcatattggttattAATTTGGACACATTAAAgctgtgttttgacattgggcTGTACCACCAAGCTAAATGTCATTGAAAAGACGTTGAAAAGAAGACGATACCCAACGTCCAATTTACGTTTGGTTTTAGTTGAAGGttgtaaatatttattttcagGTTGTTGTTAATAACGACTTGAAAACAACTTAATTTCAACGTTCTTACAGTTTAGACACATTGACTGTTGTGTAAAATATTGAATCAACTATTTCACCAAACCAGAACCTGTGAATTCAactagactttattacaaacagtaacaaaGCTGAACAATTCCATGGAAGAACTGACTCTTCATTCTTAGTACTTGGCTtttatacagtctgatccttacataacattctaaccactaggctaccctgctgccccaataatacactaaatacatgtaatatagcctatacagtctgatccttacataacattctaaccactaccctgctgccccaataat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1052302 lncRNA downstream 10793 74706338 ~ 74796853 (-) True G925026
TU1052303 lncRNA downstream 10948 74706082 ~ 74796698 (-) False G925027
TU1052304 lncRNA downstream 13357 74706082 ~ 74794289 (-) True G925027
TU1052320 lncRNA downstream 24924 74732750 ~ 74782722 (-) True G925041
TU1052275 lncRNA downstream 36989 74679248 ~ 74770657 (-) True G925015
TU1052349 lncRNA upstream 14139 74822993 ~ 74823300 (-) True G925069
TU1052351 lncRNA upstream 22775 74831629 ~ 74832660 (-) True G925071
TU1052365 lncRNA upstream 34153 74843007 ~ 75031349 (-) False G925075
TU1052385 lncRNA upstream 51537 74860391 ~ 74908747 (-) True G925083
TU1052379 lncRNA upstream 65266 74874120 ~ 74969339 (-) True G925079
XM_036933982.1 mRNA downstream 39483 74765988 ~ 74768163 (-) True LOC110518241
XM_021573272.2 mRNA downstream 46998 74758689 ~ 74760648 (-) True LOC110497259
XR_005034230.1 mRNA downstream 99922 74696063 ~ 74707724 (-) True LOC118936766
XM_036933983.1 mRNA downstream 130820 74674780 ~ 74676826 (-) True LOC118936765
XM_036989387.1 mRNA downstream 694029 74112748 ~ 74113617 (-) True LOC118966653
XM_036933977.1 mRNA upstream 16332 74825186 ~ 74877445 (-) True LOC110511351
XR_005034232.1 mRNA upstream 85880 74894734 ~ 74910153 (-) True LOC118936768
LOC110517287 mRNA upstream 107502 74916356 ~ 74932952 (-) False LOC110517287
XM_036989388.1 mRNA upstream 125145 74933999 ~ 74970163 (-) False LOC118966654
XM_036933980.1 mRNA upstream 226876 75035730 ~ 75085676 (-) True LOC110516473
TU1051061 other downstream 1175676 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 1881912 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 1901354 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 3043726 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 3059762 71745815 ~ 71747884 (-) False LOC110534950
TU1052402 other upstream 108323 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 129051 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 244262 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 475137 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 683279 75492133 ~ 75494111 (-) True LOC110511405

Expression Profile