RNA id: TU1052374



Basic Information


Item Value
RNA id TU1052374
length 238
lncRNA type intronic
GC content 0.48
exon number 2
gene id G925077
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74965151 ~ 74966051 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtaacatggggttttggtaacatggggttctgggtaacatggggtttgggtaacatggggttttgggtaacatggggttttgggtaacatgggttttgggtaacatggggtttgggtaacatggggtttgggtaacatggggtttgggtaacatggggttttggtaacatgggttttggtaacatggggttttgggtaacatggggtttgggtaacatggggtttgggtaacatgggg

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1052406 lncRNA downstream 3339 74939768 ~ 74961812 (-) True G925104
TU1052292 lncRNA downstream 46339 74890707 ~ 74918812 (-) False LOC110517287
TU1052385 lncRNA downstream 56404 74860391 ~ 74908747 (-) True G925083
TU1052333 lncRNA downstream 123266 74781693 ~ 74841885 (-) True G925053
TU1052412 lncRNA upstream 13534 74979585 ~ 74986624 (-) True G925110
TU1052357 lncRNA upstream 34972 75001023 ~ 75030753 (-) False G925075
TU1052421 lncRNA upstream 37941 75003992 ~ 75034849 (-) True G925117
TU1052356 lncRNA upstream 63862 75029913 ~ 75030753 (-) False G925075
TU1052364 lncRNA upstream 63862 75029913 ~ 75030753 (-) True G925075
LOC110517287 mRNA downstream 32199 74916356 ~ 74932952 (-) False LOC110517287
XR_005034232.1 mRNA downstream 54998 74894734 ~ 74910153 (-) True LOC118936768
XM_036933977.1 mRNA downstream 87706 74825186 ~ 74877445 (-) True LOC110511351
XM_036933982.1 mRNA downstream 196988 74765988 ~ 74768163 (-) True LOC110518241
XM_021573272.2 mRNA downstream 204503 74758689 ~ 74760648 (-) True LOC110497259
XM_036933980.1 mRNA upstream 69679 75035730 ~ 75085676 (-) True LOC110516473
XM_036933981.1 mRNA upstream 87753 75053804 ~ 75056174 (-) False LOC118936366
XM_036989389.1 mRNA upstream 170073 75136124 ~ 75201466 (-) True LOC118936693
XM_036933984.1 mRNA upstream 437592 75403643 ~ 75412894 (-) False LOC118936770
XM_036933985.1 mRNA upstream 437592 75403643 ~ 75412894 (-) False LOC118936770
TU1052404 other downstream 26794 74937905 ~ 74938357 (-) True LOC118966654
TU1052402 other downstream 46892 74917177 ~ 74918259 (-) True LOC110517287
TU1051061 other downstream 1333181 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 2039417 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 2058859 72905577 ~ 72906292 (-) False G923192
TU1052259 other upstream 87065 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 317940 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 526082 75492133 ~ 75494111 (-) True LOC110511405
TU1053615 other upstream 1430297 76396348 ~ 76397948 (-) False G926001
TU1054495 other upstream 2815961 77782012 ~ 77783305 (-) True G926732

Expression Profile