RNA id: TU1054538


Basic Information

Item Value
RNA id TU1054538
length 220
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G926766
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 77857755 ~ 77857974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcaatttgatgttattttaatggacaaaaaaatgtgcttttctttcaataacaaggacatttctcagtgaccccaaacttttgaatagtAGTGTATATTTTGAATCAATGGTTGTATGGCGAGAGATGTTTACAATCAAAAAAGACTGCACAGTGAAAGGTTTGGAATGAAAGAATGGCTGGAGTTTGGAGTGTTGTACTTGTGAAAACGGTACCAAag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1054510 lncRNA upstream 34608 77822922 ~ 77823147 (+) True G926742
TU1054506 lncRNA upstream 35287 77816247 ~ 77822468 (+) True G926739
TU1054504 lncRNA upstream 38514 77809822 ~ 77819241 (+) False G926739
TU1054503 lncRNA upstream 41187 77809822 ~ 77816568 (+) False G926739
TU1054312 lncRNA upstream 74017 77783381 ~ 77783738 (+) True G926582
TU1054539 lncRNA downstream 2065 77860039 ~ 77860291 (+) True G926767
TU1054551 lncRNA downstream 22543 77880517 ~ 77880729 (+) True G926778
TU1054591 lncRNA downstream 25201 77883175 ~ 77883827 (+) True G926798
TU1054622 lncRNA downstream 88520 77946494 ~ 77946805 (+) True G926818
TU1054588 lncRNA downstream 98776 77956750 ~ 77973198 (+) True G926795
XM_036989393.1 mRNA upstream 123264 77722258 ~ 77734491 (+) False LOC110510687
XM_036934062.1 mRNA upstream 244342 77608058 ~ 77613413 (+) True LOC110497185
XM_036934024.1 mRNA upstream 255602 77439929 ~ 77602153 (+) False LOC110534594
XM_036934036.1 mRNA upstream 255602 77439929 ~ 77602153 (+) False LOC110534594
XM_036934054.1 mRNA upstream 421236 77420543 ~ 77436519 (+) True LOC118936776
XM_036934061.1 mRNA downstream 79505 77937479 ~ 77946437 (+) True LOC118936778
XM_036989396.1 mRNA downstream 173660 78031634 ~ 78053204 (+) True LOC110498611
XM_021573216.2 mRNA downstream 195680 78053654 ~ 78057090 (+) True LOC110497216
XM_036934052.1 mRNA downstream 199375 78057349 ~ 78067236 (+) True LOC110512491
XR_002469651.2 mRNA downstream 209346 78067320 ~ 78070325 (+) True LOC110497220
TU1054174 other upstream 132702 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 403840 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 561746 77293833 ~ 77296009 (+) True G926448
TU1053430 other upstream 973513 76879645 ~ 76884242 (+) False LOC110531901
TU1054800 other downstream 662058 78520032 ~ 78530601 (+) True LOC110497229
TU1054938 other downstream 917961 78775935 ~ 78787563 (+) True G927061
TU1055067 other downstream 1194517 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 1342307 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 1423412 79281386 ~ 79284144 (+) True G927606

Expression Profile