RNA id: TU1054551


Basic Information

Item Value
RNA id TU1054551
length 213
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G926778
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 77880517 ~ 77880729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attggcctagcgtcgtccgggttagggagggtttggccggtagggatatccttgtctcattgcgcaccagcgactcctgtggcgggccgggcacagtgcacgctaaccaaggtcaccaggtgcacggtgtttcctccgacacaatggtgcggctggcttccggggttGAATGCGcggtgtgttaagaagcagtgcggcttggttgggttgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1054539 lncRNA upstream 20226 77860039 ~ 77860291 (+) True G926767
TU1054538 lncRNA upstream 22543 77857755 ~ 77857974 (+) True G926766
TU1054510 lncRNA upstream 57370 77822922 ~ 77823147 (+) True G926742
TU1054506 lncRNA upstream 58049 77816247 ~ 77822468 (+) True G926739
TU1054504 lncRNA upstream 61276 77809822 ~ 77819241 (+) False G926739
TU1054591 lncRNA downstream 2446 77883175 ~ 77883827 (+) True G926798
TU1054622 lncRNA downstream 65765 77946494 ~ 77946805 (+) True G926818
TU1054588 lncRNA downstream 76021 77956750 ~ 77973198 (+) True G926795
TU1054626 lncRNA downstream 98937 77979666 ~ 77980153 (+) True G926822
TU1054629 lncRNA downstream 116197 77996926 ~ 77997384 (+) True G926825
XM_036989393.1 mRNA upstream 146026 77722258 ~ 77734491 (+) False LOC110510687
XM_036934062.1 mRNA upstream 267104 77608058 ~ 77613413 (+) True LOC110497185
XM_036934024.1 mRNA upstream 278364 77439929 ~ 77602153 (+) False LOC110534594
XM_036934036.1 mRNA upstream 278364 77439929 ~ 77602153 (+) False LOC110534594
XM_036934054.1 mRNA upstream 443998 77420543 ~ 77436519 (+) True LOC118936776
XM_036934061.1 mRNA downstream 56750 77937479 ~ 77946437 (+) True LOC118936778
XM_036989396.1 mRNA downstream 150905 78031634 ~ 78053204 (+) True LOC110498611
XM_021573216.2 mRNA downstream 172925 78053654 ~ 78057090 (+) True LOC110497216
XM_036934052.1 mRNA downstream 176620 78057349 ~ 78067236 (+) True LOC110512491
XR_002469651.2 mRNA downstream 186591 78067320 ~ 78070325 (+) True LOC110497220
TU1054174 other upstream 155464 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 426602 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 584508 77293833 ~ 77296009 (+) True G926448
TU1053430 other upstream 996275 76879645 ~ 76884242 (+) False LOC110531901
TU1054800 other downstream 639303 78520032 ~ 78530601 (+) True LOC110497229
TU1054938 other downstream 895206 78775935 ~ 78787563 (+) True G927061
TU1055067 other downstream 1171762 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 1319552 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 1400657 79281386 ~ 79284144 (+) True G927606

Expression Profile