RNA id: TU1054622


Basic Information

Item Value
RNA id TU1054622
length 312
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G926818
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 77946494 ~ 77946805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gTACTATACACTGGGTAGTTTGGatactggatgctgattggctaaaacagCATTCAGCCGTGTGTATGTGAGACCGTATACCATGACTATGACGTTGCTTCTTTTCCCCTTTATTAAAATGGCTACATCAACAATAGGTTGGCATGACGATGTAGAAAATAAGCGTTTGATGAATTTGAGAGAAAACAAAACGGAAAGAACACCGTGAAACAAAACAAGAGTGGGCACTTACCTGCTTCACTGACTGGTGTGTAGAGAAGGGAtacatactgtactatatgtcttcatacacacatctactatatactgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1054591 lncRNA upstream 62667 77883175 ~ 77883827 (+) True G926798
TU1054551 lncRNA upstream 65765 77880517 ~ 77880729 (+) True G926778
TU1054539 lncRNA upstream 86203 77860039 ~ 77860291 (+) True G926767
TU1054538 lncRNA upstream 88520 77857755 ~ 77857974 (+) True G926766
TU1054510 lncRNA upstream 123347 77822922 ~ 77823147 (+) True G926742
TU1054588 lncRNA downstream 9945 77956750 ~ 77973198 (+) True G926795
TU1054626 lncRNA downstream 32861 77979666 ~ 77980153 (+) True G926822
TU1054629 lncRNA downstream 50121 77996926 ~ 77997384 (+) True G926825
TU1054630 lncRNA downstream 50626 77997431 ~ 77999573 (+) False G926826
TU1054633 lncRNA downstream 51886 77998691 ~ 77999995 (+) True G926826
XM_036934061.1 mRNA upstream 57 77937479 ~ 77946437 (+) True LOC118936778
XM_036989393.1 mRNA upstream 212003 77722258 ~ 77734491 (+) False LOC110510687
XM_036934062.1 mRNA upstream 333081 77608058 ~ 77613413 (+) True LOC110497185
XM_036934024.1 mRNA upstream 344341 77439929 ~ 77602153 (+) False LOC110534594
XM_036934036.1 mRNA upstream 344341 77439929 ~ 77602153 (+) False LOC110534594
XM_036989396.1 mRNA downstream 84829 78031634 ~ 78053204 (+) True LOC110498611
XM_021573216.2 mRNA downstream 106849 78053654 ~ 78057090 (+) True LOC110497216
XM_036934052.1 mRNA downstream 110544 78057349 ~ 78067236 (+) True LOC110512491
XR_002469651.2 mRNA downstream 120515 78067320 ~ 78070325 (+) True LOC110497220
XM_036934038.1 mRNA downstream 171705 78118510 ~ 78141506 (+) True LOC110518069
TU1054174 other upstream 221441 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 492579 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 650485 77293833 ~ 77296009 (+) True G926448
TU1053430 other upstream 1062252 76879645 ~ 76884242 (+) False LOC110531901
TU1054800 other downstream 573227 78520032 ~ 78530601 (+) True LOC110497229
TU1054938 other downstream 829130 78775935 ~ 78787563 (+) True G927061
TU1055067 other downstream 1105686 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 1253476 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 1334581 79281386 ~ 79284144 (+) True G927606

Expression Profile