RNA id: TU1054655


Basic Information

Item Value
RNA id TU1054655
length 264
lncRNA type intronic
GC content 0.42
exon number 1
gene id G926846
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78043214 ~ 78043477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAACATTTGGGGTGACAATATATGACATAGTCTGACGTTGAAGACCTGTCAAATCCAATtcgttttccacgttgattcaacgtccaTTACATCGATGTTTTGgcttgaaatgatgtggaaacaacatggaTTCAACCACTTTTTCTCCAGTGGGTCAGTACTTAGTTCCAACCGATAATTATAGACTAACAGGGTTAATTAAACATGGTTAACACCTGTTTCCCTCCCCCAAGGAAAGCATCTGTCTGCGTCTCCCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1054654 lncRNA upstream 123 78042662 ~ 78043091 (+) True G926845
TU1054637 lncRNA upstream 29085 78004868 ~ 78014129 (+) True G926829
TU1054633 lncRNA upstream 43219 77998691 ~ 77999995 (+) True G926826
TU1054630 lncRNA upstream 43641 77997431 ~ 77999573 (+) False G926826
TU1054629 lncRNA upstream 45830 77996926 ~ 77997384 (+) True G926825
TU1054656 lncRNA downstream 129 78043606 ~ 78044256 (+) False G926847
TU1054657 lncRNA downstream 129 78043606 ~ 78048415 (+) True G926847
TU1054682 lncRNA downstream 140648 78184125 ~ 78197726 (+) True G926867
TU1054686 lncRNA downstream 164955 78208432 ~ 78209231 (+) True G926871
TU1054569 lncRNA downstream 202512 78245989 ~ 78247524 (+) True LOC110518385
XM_036934061.1 mRNA upstream 96777 77937479 ~ 77946437 (+) True LOC118936778
XM_036989393.1 mRNA upstream 308723 77722258 ~ 77734491 (+) False LOC110510687
XM_036934062.1 mRNA upstream 429801 77608058 ~ 77613413 (+) True LOC110497185
XM_036934024.1 mRNA upstream 441061 77439929 ~ 77602153 (+) False LOC110534594
XM_021573216.2 mRNA downstream 10177 78053654 ~ 78057090 (+) True LOC110497216
XM_036934052.1 mRNA downstream 13872 78057349 ~ 78067236 (+) True LOC110512491
XR_002469651.2 mRNA downstream 23843 78067320 ~ 78070325 (+) True LOC110497220
XM_036934038.1 mRNA downstream 75033 78118510 ~ 78141506 (+) True LOC110518069
LOC118936774 mRNA downstream 103992 78147469 ~ 78175162 (+) True LOC118936774
TU1054174 other upstream 318161 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 589299 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 747205 77293833 ~ 77296009 (+) True G926448
TU1053430 other upstream 1158972 76879645 ~ 76884242 (+) False LOC110531901
TU1054800 other downstream 476555 78520032 ~ 78530601 (+) True LOC110497229
TU1054938 other downstream 732458 78775935 ~ 78787563 (+) True G927061
TU1055067 other downstream 1009014 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 1156804 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 1237909 79281386 ~ 79284144 (+) True G927606

Expression Profile