RNA id: TU1054855



Basic Information


Item Value
RNA id TU1054855
length 418
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G926994
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78586681 ~ 78587098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtgtgaacagacaacaacacagagttacacatgcagtaaacaataaacaagtcaataacccagtagaaaaaaagagtctatatacattgtgtgcaaaaggcatgaggaggtaggcataAAATAGgccactggagtgataaatgatcagatggtcatgtgcaagtagagatactggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggctGAGGTAgataaattgggtgggctatttacagaggaactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttaaagttggtgagggaaataaaagtctccaacttcagccatttttgtaattcgttccagtcacaggcagcagagaactggaaggaaaggcagccaaatgaggtccCCTTAAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1054848 lncRNA upstream 10280 78573496 ~ 78576401 (+) True G926988
TU1054796 lncRNA upstream 28612 78555991 ~ 78558069 (+) True G926954
TU1054832 lncRNA upstream 44426 78541931 ~ 78542255 (+) True G926982
TU1054797 lncRNA upstream 48373 78537606 ~ 78538308 (+) False LOC110497242
TU1054798 lncRNA upstream 48373 78537695 ~ 78538308 (+) True LOC110497242
TU1054861 lncRNA downstream 5022 78592120 ~ 78592968 (+) True G926999
TU1054868 lncRNA downstream 19241 78606339 ~ 78607496 (+) True G927006
TU1054880 lncRNA downstream 31062 78618160 ~ 78678777 (+) True G927013
TU1054964 lncRNA downstream 247058 78834156 ~ 78834407 (+) True G927077
TU1054968 lncRNA downstream 261806 78848904 ~ 78854165 (+) False G927080
XM_036934076.1 mRNA upstream 48372 78535124 ~ 78538309 (+) False LOC110497242
XM_036934072.1 mRNA upstream 53520 78519650 ~ 78533161 (+) False LOC110497229
XM_021573227.2 mRNA upstream 85054 78495351 ~ 78501627 (+) True LOC110497227
XM_036934070.1 mRNA upstream 103828 78475963 ~ 78482853 (+) False LOC110497234
XM_036989399.1 mRNA downstream 47062 78634160 ~ 78643493 (+) True LOC118966657
XR_005034240.1 mRNA downstream 136960 78724058 ~ 78727002 (+) True LOC110534505
XR_005034239.1 mRNA downstream 139901 78726999 ~ 78730160 (+) True LOC110497250
XM_021619501.2 mRNA downstream 188782 78775880 ~ 78777576 (+) True LOC110534589
LOC118966658 mRNA downstream 199660 78786758 ~ 78787742 (+) True LOC118966658
TU1054800 other upstream 56080 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 861628 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 1132766 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 1290672 77293833 ~ 77296009 (+) True G926448
TU1053428 other upstream 1702439 76881146 ~ 76884242 (+) True LOC110531901
TU1054938 other downstream 188837 78775935 ~ 78787563 (+) True G927061
TU1055067 other downstream 465393 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 613183 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 694288 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 1010547 79597645 ~ 79600772 (+) True LOC110514189

Expression Profile