RNA id: TU1055531


Basic Information

Item Value
RNA id TU1055531
length 3880
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G927478
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78891942 ~ 78939199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGACCAGACCAATGCTAACTCGTTACATTTCCGTGacgtaaaatttgatttgtttttcatGATTAGATTTGTTGATTCGTCCCTAATAAGCAGAAAAGCAACGCACCAGAAGAATGGTTTGTTATTATGGGTAATTTTCCCATCTCCTGTCAGACATGTGACGTGTTCTGTCTGGCCTGGAGAGACTGAGCATGTGCAGATGTCAGGTTATGATTGGGCCCCAGTTTGTTATTATGGGTAATTCCCCCATCTCCTGACAGACATGTGACGTGTTCTGTCTGGCCTGGAGAGACTGAGCATGTGCAGATGTCAGGTTATGATTGGGCCCCAGTTTGTTATTATGGGTAATTCCCCCATCTCCTGACAGACATGTGACGTGTTCTGTCTGGCCTGGAGAGACTGAGCATGTGCAGATGTCAGGTTATGATTGGGCCCCAGTTTGTTATTATGGGTAATTCCCCCATCTCCTGACAGACATGTGACGTGTTCTGTCTGGCCTGGAGAGACTGAGCATGTGCAGATGTCAGGTTATGATTGGGCCCCAGTTTGTTATTATGGGTAATTCCCCCATCTCCTGACAGACATGTGACTGTCTGGCCTGGAGAGACTGAGCATGTGCAGATGGCAGGTTATGATTGGGCCCCAGTTTGTTATTATGGGTAATTCCCCCATCTCCTGACAGACATGTGATGTGTTCTGTCTGGCCTGGAGAGACTGAGCATGTGCAGATGTCAGGTTATGATTGGGCCCCAGTTTGTTATTATGGGTAATTTCCCCATCTCCTGACAGACATGTGACGTGTTCTGTCTGGCCTGGAGAGACTGAGCATGTGCAGATGGCAGGTTATGATTGGGCCCCATGTGAGGCCTGTGTATACTGGAGCAGATGCATGTCTGCTGAGTCCTTGGCTAATtctccaatggcaccctattccctatatagtgcactactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccagagctctatggcaccctattccctatatagagcactactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagggcccttttccctatatagtgcactactttataccagaggcctatggcaccctattccctatatagtgcattactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaacagagccctatggcaccctattccctatatagtgcactactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccatagccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccatagccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccctatatggtgcactactttagaccatagccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagagtcctattcactatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccaataGGAGAGTACCATTTTGGACACAACAGTTTTATTCCTGAGCAGAGACCATTCAGCAAATTGTGTATCCTTGAATACGGGAGTTAGTATAAGACACAGGGGGAAACACAcacaatgtaaacacacacacacacacaatgtaaacacacacgcacacaatgtCTAGAGGTAAACGCATGGACAAGAACACAGACTcacatactctctctcacacacacaaacatacacacagattTCCACACACATCCAGATTCAACACAGCTaggtagatatactgtctgtaggtctgtaatTTACTGTCTTAAGACCTCATTAAGTGCTATAATATCATGGGGAGATatactgtctgtatgtctgtaactTACTGTCTAAGACCTCATTAAGTGCTATAATATCATGGGGAGATATACTGTCTGTAATTTACTGTCTAAGACCTCATTAAGTGCTATAATATCATGGGGAGATATACTGTCTGTAATTTACTGTCTAAGACCTCATTAAGTGCTATAATATCATGGGGAGATatactgtctgtatgtctgtaattTACTGTGTTAGACCTCATTAAGTGCTATAATATCATGGGGAGATAtactgtctgtaggtctgtaatTTACTGTCTAAGACCTCATTAAGTGCTATAATATCATGGGGAGATATACTGTCTGTAATTTACTGTGTTAGACCTCATTAAGTGCTATAATATCATGGGGAGATAtactgtctgtaggtctgtaatTTACTGTCTAAGACCTCATTAAGTGCTATAATATCATGGGGAGATATACTGTCTGTAATTTACTGGCTAAGACCTCATTAAGTGCTATAATATCATGGGGAGATAtactgtctgtaggtctgtaatTTACTGTCTTAGACCTCATTAAGTGCTATAATATCATGGGGAGATATACTGTCTGTAATTTACTGGCTAAGACCTCATTAAGTGCTATAATATCATGGGGAGATAtactgtctgtaggtctgtaatTTACTGTCTTAGACCTCATTAAGTGCTATAATATCATGGGGAGATATACTGTCTGTAATTTACTGGCTAAGACCTCATTAAGTGCTATAATATCATGGGGAGATATACTGTCTGTAATTTACTGGCTAAGACCTCATTAAGTGCTATAATATCATGGGGGAGGTTAAATATATACTGTCTATGTATAATAAGACTCTGTTTCTGTCTTCATTAAAAAATAATCCATTCTATATACATGCAGTACTCTGATAGAAGATATACttctggaaatatatatatatatacctcttcGAATAGtctgttaaaatatatatatcaacTGACCCTGTGTGTTGTGACTATTGGCACTTGGAATAACTAAACCCGTTACAGACGATCCCAGACCTGTGTGTTAAGACGGCACCATTCATATAGAACATTTACTAGATGTATTTTTCCCAAAGCAACTTAGAGTCAGTCATACGTGCATAGATTTGACGTACGGATGGCCCGAGCTGGAATCAAACCCACGACCTTTGGGGTTGCAAGTGccttgctctaccaactgagccaacaCAAGACCGAagtgatctgggaccaggctgagTAATATTGCCGACTCCCTGGTCTGGTTTAGACTGTATTTATCCGTAGGTCTGTTTGGTCGTCATGATTGGATTGGATCAGACGTGGTTGTTGTTCTGATAAAACGTTTCAAAATGTTGAGTTTAAAAACAACATTTCCCAGCATCCCACTAGAACCCAAGCCCGTCCATCAAACGAACGGTGACACAACATCTCTCCCTCCGGGGGCCATGTTCCAACACAAATGAAATACACCCTTTAACTGAATGACTTTGATAACCTCAAGGCAggaagggaggaaagatggaaggatggatgcATTTTCTAAAGTGTTGGAACAGAGCCGAAAGACCTTTAGGTGGAAGAGAGAGGCGGCTCTTCACGCTAGCTGAACGTCTGTCACCTCATATCTgaccaggaactgaccaggaactgaccaggaaaaCACTGAATAAAGACATTTTGCCAAAAGTTACTCATAAAAACGTACAGTTATTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055543 lncRNA downstream 53470 78881252 ~ 78881724 (-) True G927488
TU1055495 lncRNA downstream 74609 78815492 ~ 78860585 (-) True G927464
TU1055391 lncRNA downstream 130843 78803779 ~ 78804351 (-) True LOC118936786
TU1055454 lncRNA downstream 220971 78713650 ~ 78714223 (-) True G927433
TU1055387 lncRNA downstream 222419 78701290 ~ 78712775 (-) True G927373
TU1055527 lncRNA upstream 426 78939625 ~ 78941438 (-) True G927477
TU1055512 lncRNA upstream 3693 78942892 ~ 78947078 (-) False LOC110516210
TU1055514 lncRNA upstream 3693 78942892 ~ 78947078 (-) False LOC110516210
TU1055515 lncRNA upstream 3693 78942892 ~ 78947296 (-) False LOC110516210
TU1055517 lncRNA upstream 3693 78942892 ~ 78947078 (-) False LOC110516210
XM_036934590.1 mRNA downstream 68273 78864883 ~ 78866921 (-) True LOC118936936
XM_036934085.1 mRNA downstream 72520 78816477 ~ 78862674 (-) False LOC110498601
XM_036934096.1 mRNA upstream 9247 78948446 ~ 79011434 (-) False LOC110516210
LOC118937053 mRNA upstream 141542 79080741 ~ 79080830 (-) True LOC118937053
XR_005034397.1 mRNA upstream 142292 79081491 ~ 79081654 (-) True LOC118936972
XR_005034432.1 mRNA upstream 144427 79083626 ~ 79083787 (-) True LOC118937011
XR_005034398.1 mRNA upstream 146321 79085520 ~ 79085683 (-) True LOC118936973
TU1055345 other downstream 425263 78507077 ~ 78509931 (-) True LOC110497238
TU1055177 other downstream 461135 78467432 ~ 78474059 (-) True LOC110497224
TU1055178 other downstream 490053 78442928 ~ 78445141 (-) True LOC110497241
TU1055181 other downstream 493212 78441305 ~ 78441982 (-) True G927222
TU1055320 other downstream 501098 78429835 ~ 78434096 (-) True G927317
TU1055750 other upstream 279316 79218515 ~ 79222867 (-) False G927654
TU1055751 other upstream 279316 79218515 ~ 79222867 (-) True G927654
TU1055754 other upstream 291972 79231171 ~ 79231580 (-) True LOC110511089
TU1055775 other upstream 335494 79274693 ~ 79281790 (-) True G927673
TU1056065 other upstream 432917 79372116 ~ 79372872 (-) True G927893

Expression Profile