RNA id: TU1055589


Basic Information

Item Value
RNA id TU1055589
length 1226
lncRNA type read_through
GC content 0.42
exon number 3
gene id G927523
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78993736 ~ 78995164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTTGAGAGAGGCTGATGGTCCTTCACCTCTTTACCAATGACTTGAGAGAGGCTGATGGTCCTTCACCTCTTTACCAATGACTTGAGAGaggctgaaggtgtgtgtgtgtgtggtgtggtgtgtgtgtgtgtgtgtgtgcatgaatggtgtgtgtatggtgtgtgtacggtgtgtgtacgttgtgtgtatggtgtgtgtacggtgtgtgtgtgtgtgtacagtgtgttcctaccctgctgtgtgtgtgtacggtgtgtgtacggtgtgtgtgtgtgtgtgtgtgtgtacggtgtgtgttcctaccctgctgtgtgtgtgtacggtgtgtgtacggtgtgtgttcCTACCCTGCTGTATCCGCCCCCCGGTCTAAACACAATGTTTTACTAAATGTTGTTTTTACGTGAAATTAATGTGAAATATTTATGTTTActttaaaacaaataataattaaATGTTTTTATCAATCTGCCCATTGACTTCAGTTGAAAACTGTCTGGATAAAATGGAAAGCTTATTGACTGAAAGTGCTTTTGCGTATTGGAACAATGCAGGGGGGGTTTTCTACCACAGAAAACTACCCTTTTAACTTGTCTTAATATTCGGTGCAGATGTGTATTTCAGGGTAAAAAACCCTCACCAACCTAACTGGAATGACTAACAGTTGCTTCTTGGAAAATGCAGTTGTTCCCTCCATTTTAAAAAGTCGAATCCTTTCAGAAGAACAAGTTAACGGTTTCTCTTGCTTACATTGTATTTGACATCCAGGTATTTTTCACAAATACAGTATTTTTGTGTCCCACATTGTCTCCCGGTTACTTCTTTCACTGCAGGTGTCTCGTATACCGTAAGCTTAGCACAGTCCTCTTCCTGAGCACCGTCTTCTGACCCCACACCTCTCTTCACCCTATGAGAACAAAACACTGGCAATTATTATCAGAAACGTTCTGGATTTCTTCATGCCCTAAAAAGGTTCAAATCTCCGTCATACTTTTCGATCGATGGTGAAATGGCTTTACCGTGTAGATATCTCCTTTGTGTTGTTGGGAGAAAAACCAATCCAGGCTACATCCAACTTCTTAGCACGGACCACTTCAAGGAGAAAGTCCTAGTGATGAACAATAACATAAATGGTAGAATCAGACTTATTTTTCTCTTCTCCATATTTGGCCTCTTAGAATGTGATCTCTCTGACTGatgctcagtcacacacacacaggcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055587 lncRNA downstream 6666 78986678 ~ 78987070 (-) True G927522
TU1055576 lncRNA downstream 17323 78965065 ~ 78976413 (-) False G927514
TU1055578 lncRNA downstream 19405 78965065 ~ 78974331 (-) True G927514
TU1055518 lncRNA downstream 44068 78942892 ~ 78949668 (-) False LOC110516210
TU1055594 lncRNA upstream 4396 78999560 ~ 79001614 (-) True G927528
TU1055596 lncRNA upstream 8511 79003675 ~ 79004107 (-) True G927529
TU1055606 lncRNA upstream 11594 79006758 ~ 79025424 (-) True G927538
TU1055609 lncRNA upstream 19942 79015106 ~ 79017594 (-) True G927541
TU1055624 lncRNA upstream 76119 79071283 ~ 79071539 (-) True G927556
XM_036934590.1 mRNA downstream 126815 78864883 ~ 78866921 (-) True LOC118936936
XM_036934085.1 mRNA downstream 131062 78816477 ~ 78862674 (-) False LOC110498601
LOC118937053 mRNA upstream 85577 79080741 ~ 79080830 (-) True LOC118937053
XR_005034397.1 mRNA upstream 86327 79081491 ~ 79081654 (-) True LOC118936972
XR_005034432.1 mRNA upstream 88462 79083626 ~ 79083787 (-) True LOC118937011
XR_005034398.1 mRNA upstream 90356 79085520 ~ 79085683 (-) True LOC118936973
XR_005034433.1 mRNA upstream 92437 79087601 ~ 79087762 (-) True LOC118937012
TU1055345 other downstream 483805 78507077 ~ 78509931 (-) True LOC110497238
TU1055177 other downstream 519677 78467432 ~ 78474059 (-) True LOC110497224
TU1055178 other downstream 548595 78442928 ~ 78445141 (-) True LOC110497241
TU1055181 other downstream 551754 78441305 ~ 78441982 (-) True G927222
TU1055320 other downstream 559640 78429835 ~ 78434096 (-) True G927317
TU1055750 other upstream 223351 79218515 ~ 79222867 (-) False G927654
TU1055751 other upstream 223351 79218515 ~ 79222867 (-) True G927654
TU1055754 other upstream 236007 79231171 ~ 79231580 (-) True LOC110511089
TU1055775 other upstream 279529 79274693 ~ 79281790 (-) True G927673
TU1056065 other upstream 376952 79372116 ~ 79372872 (-) True G927893

Expression Profile