RNA id: TU1055619


Basic Information

Item Value
RNA id TU1055619
length 277
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G927551
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79068778 ~ 79069054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctactatcagggtagtgaccatgctggaggtgtgttactctacagtctactatcagggtagtgaccatgctggaggtgtgttactgtactctacagtctactatcagggtagtcaccatgctggaggtgtgttactctacagtctactatcagggtagtgaccatgctggaggtatgttactctacagtctactatcagggtagtgaccatgctggaggtgtgttactctacagtctactatcagggtagtgaccatgctggaggtgtgttactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055618 lncRNA upstream 810 79067624 ~ 79067968 (+) True G927550
TU1055009 lncRNA upstream 47014 78982045 ~ 79021764 (+) True G927109
TU1055049 lncRNA upstream 64573 79003589 ~ 79004205 (+) False LOC118936790
TU1055051 lncRNA upstream 64573 79003589 ~ 79004205 (+) False LOC118936790
TU1055054 lncRNA upstream 64573 79003589 ~ 79004205 (+) True LOC118936790
TU1055623 lncRNA downstream 1900 79070954 ~ 79071306 (+) True G927555
TU1055630 lncRNA downstream 6589 79075643 ~ 79076371 (+) True G927560
TU1055632 lncRNA downstream 25213 79094267 ~ 79094699 (+) True G927562
TU1055634 lncRNA downstream 48210 79117264 ~ 79117800 (+) True G927564
TU1055636 lncRNA downstream 75428 79144482 ~ 79145678 (+) True G927566
XM_036934101.1 mRNA upstream 2982 79023569 ~ 79065796 (+) False LOC110515636
XM_036934100.1 mRNA upstream 2982 79023570 ~ 79065796 (+) False LOC110515636
XR_005034245.1 mRNA upstream 64596 79003690 ~ 79004182 (+) False LOC118936790
XR_005034246.1 mRNA upstream 64596 79003690 ~ 79004182 (+) False LOC118936790
XR_005034244.1 mRNA upstream 72965 78994971 ~ 78995813 (+) True LOC118936789
XM_036934104.1 mRNA downstream 90453 79159507 ~ 79163060 (+) False LOC110513572
XM_036934102.1 mRNA downstream 90467 79159521 ~ 79164674 (+) False LOC110513572
XM_036934103.1 mRNA downstream 90468 79159522 ~ 79164674 (+) False LOC110513572
XM_036934105.1 mRNA downstream 98650 79167704 ~ 79171045 (+) False LOC110513571
XR_005034247.1 mRNA downstream 138812 79207866 ~ 79209040 (+) True LOC118936792
TU1055067 other upstream 3231 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 281215 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 538177 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1343725 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 1614863 77440418 ~ 77453915 (+) False LOC110534594
TU1055659 other downstream 131227 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 212332 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 528591 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 657991 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 957948 80027002 ~ 80028219 (+) True G928206

Expression Profile