RNA id: TU1055647


Basic Information

Item Value
RNA id TU1055647
length 334
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G927572
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79173530 ~ 79173863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAGCAAAAGCTTGCAGACCCAGTAGCTCTCTGGGAGGAGGATTTGATATCACCAAGACCACTTTAGGTTCATACGGCATCAACTAGCTTTCTGATTGGTTTACCGGCCATCAACTAGCTTTCTGATTGGTTACCTCACATATAAAGCTAATTTAATGCAATAAGCAGATTTCCGTTGTGTGTAGTTGTGTTTTCAACTGTAATCTCAGTCCATGATTGGATCTTGGTCACCCCTTTTATATTCTTTGTCTGGTATTTCTGATCAGGTGTGTTATGATCCTAGCAGACGTGTGTGGATGAATGATCACGTAACGTGAttaacggatgtgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055628 lncRNA upstream 2485 79170396 ~ 79171045 (+) True LOC110513571
TU1055627 lncRNA upstream 2659 79170396 ~ 79170871 (+) False LOC110513571
TU1055646 lncRNA upstream 7367 79165565 ~ 79166163 (+) True G927571
TU1055643 lncRNA upstream 12610 79159600 ~ 79160920 (+) False LOC110513572
TU1055644 lncRNA upstream 12610 79159600 ~ 79160920 (+) False LOC110513572
TU1055654 lncRNA downstream 19163 79193026 ~ 79194260 (+) True G927579
TU1055665 lncRNA downstream 44959 79218822 ~ 79281152 (+) False LOC118937004
TU1055666 lncRNA downstream 44959 79218822 ~ 79318667 (+) True LOC118937004
TU1055682 lncRNA downstream 102152 79276015 ~ 79292617 (+) True LOC118936978
TU1055688 lncRNA downstream 104161 79278024 ~ 79325667 (+) False G927607
XM_036934105.1 mRNA upstream 2485 79167704 ~ 79171045 (+) False LOC110513571
XM_036934102.1 mRNA upstream 8856 79159521 ~ 79164674 (+) False LOC110513572
XM_036934103.1 mRNA upstream 8856 79159522 ~ 79164674 (+) False LOC110513572
XM_036934104.1 mRNA upstream 10470 79159507 ~ 79163060 (+) False LOC110513572
XM_036934101.1 mRNA upstream 107734 79023569 ~ 79065796 (+) False LOC110515636
XR_005034247.1 mRNA downstream 34003 79207866 ~ 79209040 (+) True LOC118936792
XR_005034404.1 mRNA downstream 71471 79245334 ~ 79245497 (+) True LOC118936979
XR_005034470.1 mRNA downstream 73553 79247416 ~ 79247579 (+) True LOC118937074
XR_005034480.1 mRNA downstream 75639 79249502 ~ 79249665 (+) True LOC118937085
XR_005034488.1 mRNA downstream 77725 79251588 ~ 79251751 (+) True LOC118937094
TU1055067 other upstream 107983 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 385967 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 642929 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1448477 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 1719615 77440418 ~ 77453915 (+) False LOC110534594
TU1055659 other downstream 26418 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 107523 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 423782 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 553182 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 853139 80027002 ~ 80028219 (+) True G928206

Expression Profile