RNA id: TU1055811


Basic Information

Item Value
RNA id TU1055811
length 949
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G927700
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79574739 ~ 79575950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgagagagagggggggggcagaaagagggagatggagagggttgggggacagagagggggggcagagagagagagggggggcagagagagagggagaaggagagacggtgacagagggagagagagggagaaggagagacggtgacagagggagagagagggagagggagagacggtgacagagggagagagagggagagacggtgacagagggagaggttggggcagagagagagagggagaaggagagacggtgacagagggagagagagggagagggagagacggtgacagagggagagagagggagagacggtgacagagggagaggttggggcagagagagagagggagaaggagagacggtgacagagggagcgagagggagagggagagacggtgacagagggagagagagggagagacggtgacagagggagaaggagagacggtgacagagggagaaggagagacggtgacagagggagaaggagagacggtgacagagggagaaggagagacggtgacagagggagagagaccaaacAATTAAACAGACGGACACACAACTAGTCTTTCTTCGTCCAAATCAGATGACCTCATCTCCTTTCCCTCTCAGCTGCTGATCTGACATCGTTGAAGAGCCTCAAGGAAAGCCACATGACAGATGAGTGTCTTACTGTACCAGACAGGAAAGGAGAGAGCTGACAGAGGAAGGAAGCCATTTTACAGTGTTAGGACACTGCTAGCTAGCGACAGGCTCGTACTTCTCTCCCTTCTAGAGAaataattgaaataaataaataattgactcCATTTAAGATTATTTTGGTTCCGCCTGCATCCTCGTTTCCCCCCCGGACCATTCATTAAGACGGACAACAACACACCCACCATGAGGGACTTCCAGCACCTTGATGACAAACTAAGAAAAATAATATTCAAtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055889 lncRNA upstream 12067 79562320 ~ 79562672 (+) True G927764
TU1055886 lncRNA upstream 28048 79545397 ~ 79546691 (+) True G927761
TU1055880 lncRNA upstream 72741 79500372 ~ 79501998 (+) True G927755
TU1055877 lncRNA upstream 85611 79488618 ~ 79489128 (+) True G927754
TU1055874 lncRNA upstream 98434 79475886 ~ 79476305 (+) True G927752
TU1055914 lncRNA downstream 66357 79642307 ~ 79646510 (+) False G927782
TU1055917 lncRNA downstream 67029 79642979 ~ 79648095 (+) True G927782
TU1055918 lncRNA downstream 75218 79651168 ~ 79651460 (+) True G927783
TU1055920 lncRNA downstream 80994 79656944 ~ 79657412 (+) True G927785
TU1055928 lncRNA downstream 96160 79672110 ~ 79674388 (+) True G927791
XM_036934117.1 mRNA upstream 198 79443387 ~ 79574541 (+) False LOC110511504
XM_036934125.1 mRNA upstream 198 79443387 ~ 79574541 (+) False LOC110511504
XM_036934126.1 mRNA upstream 198 79443387 ~ 79574541 (+) False LOC110511504
XM_036934122.1 mRNA upstream 266 79443387 ~ 79574473 (+) False LOC110511504
XM_036989401.1 mRNA downstream 4156 79580106 ~ 79581616 (+) True LOC118966659
XM_036934128.1 mRNA downstream 8124 79584074 ~ 79703116 (+) False LOC110516173
XM_036934130.1 mRNA downstream 8985 79584935 ~ 79702031 (+) False LOC110516173
XM_036934131.1 mRNA downstream 8985 79584935 ~ 79702031 (+) False LOC110516173
XM_036934127.1 mRNA downstream 8985 79584935 ~ 79703116 (+) False LOC110516173
TU1055684 other upstream 290595 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 371758 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 509192 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 787176 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 1044138 78520032 ~ 78530601 (+) True LOC110497229
TU1055895 other downstream 21695 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 151095 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 451052 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 735994 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 1245714 80821664 ~ 80830655 (+) False LOC110515606

Expression Profile