RNA id: TU1055928


Basic Information

Item Value
RNA id TU1055928
length 1556
lncRNA type intronic
GC content 0.42
exon number 2
gene id G927791
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79672110 ~ 79674388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtagtggtaccatctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagcagtggtaccatctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagcagtggtaccatctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccatctatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccatctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccatctatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccagctatatccagacagtagtggtaccagctatatcactatatccagacagtagtggtaccatctataccactatatccagacagtagatCACAGCTTGGTGGTTGTCCAGGTATCTGGCCTGTCTTAGTTAATTCACTTCAGTTTTCCTCCAGAAGTGTCTCAATATGCGAGTTTGTTAACTGTGTAGGTTTCTGTGGATTCAACATTAAATCTACACTCTTGTGTATCTGGATAGTCTGGGAGGAGTGTTACTCTAGCTTGGAGGAAGACGTCACTGTGAACAGGAAACAGATCTCAGTTCCTCTGGTGGTCGAGGTACTGGCTTTGGAGATAGACAGACCATCGTTTACATACCAGTATGAAGACCACTGTTTTTTGGAGTTTAAActtacaggagggtttctctccaggaacagggttggagttaaaacctacaggagggtttctctccagcaacagggttggagttacaacctacaggagggtttctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055920 lncRNA upstream 14698 79656944 ~ 79657412 (+) True G927785
TU1055918 lncRNA upstream 20650 79651168 ~ 79651460 (+) True G927783
TU1055917 lncRNA upstream 24015 79642979 ~ 79648095 (+) True G927782
TU1055914 lncRNA upstream 25600 79642307 ~ 79646510 (+) False G927782
TU1055810 lncRNA upstream 96160 79574739 ~ 79575950 (+) False G927700
TU1055823 lncRNA downstream 27744 79702132 ~ 79702511 (+) False LOC110516173
TU1055824 lncRNA downstream 27744 79702132 ~ 79702775 (+) True LOC110516173
TU1055951 lncRNA downstream 42374 79716762 ~ 79717092 (+) True G927808
TU1055952 lncRNA downstream 45871 79720259 ~ 79720865 (+) True G927809
TU1055958 lncRNA downstream 49842 79724230 ~ 79724445 (+) True G927812
XM_036934132.1 mRNA upstream 70424 79597075 ~ 79601686 (+) False LOC110514189
XM_036989401.1 mRNA upstream 90494 79580106 ~ 79581616 (+) True LOC118966659
XM_036934126.1 mRNA upstream 97569 79443387 ~ 79574541 (+) False LOC110511504
XR_005034253.1 mRNA downstream 23690 79698078 ~ 79700682 (+) True LOC118936796
XM_036934133.1 mRNA downstream 52673 79727061 ~ 79782057 (+) False LOC110532970
XM_036934134.1 mRNA downstream 52673 79727061 ~ 79782057 (+) False LOC110532970
XM_036934135.1 mRNA downstream 52673 79727061 ~ 79782057 (+) False LOC110532970
XM_036934136.1 mRNA downstream 52673 79727061 ~ 79782057 (+) False LOC110532970
TU1055895 other upstream 71338 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 387966 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 469129 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 606563 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 884547 78775935 ~ 78787563 (+) True G927061
TU1055948 other downstream 52657 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 352614 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 637556 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 1147276 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1445177 81119565 ~ 81120877 (+) False G928731

Expression Profile