RNA id: TU1055952


Basic Information

Item Value
RNA id TU1055952
length 607
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G927809
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79720259 ~ 79720865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagatactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattgggatcattatctgtttctaaagcagcaggtagtcttcctagggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagatactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattgggatcattatctgtttctaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055951 lncRNA upstream 3167 79716762 ~ 79717092 (+) True G927808
TU1055824 lncRNA upstream 17484 79702132 ~ 79702775 (+) True LOC110516173
TU1055823 lncRNA upstream 17748 79702132 ~ 79702511 (+) False LOC110516173
TU1055928 lncRNA upstream 45871 79672110 ~ 79674388 (+) True G927791
TU1055920 lncRNA upstream 62847 79656944 ~ 79657412 (+) True G927785
TU1055958 lncRNA downstream 3365 79724230 ~ 79724445 (+) True G927812
TU1055973 lncRNA downstream 26372 79747237 ~ 79747551 (+) True G927825
TU1055979 lncRNA downstream 34568 79755433 ~ 79756339 (+) True G927829
TU1055945 lncRNA downstream 63557 79784422 ~ 79785699 (+) False G927804
TU1055946 lncRNA downstream 64028 79784893 ~ 79785699 (+) True G927804
XM_036934128.1 mRNA upstream 17143 79584074 ~ 79703116 (+) False LOC110516173
XM_036934133.1 mRNA downstream 6196 79727061 ~ 79782057 (+) False LOC110532970
XM_036934134.1 mRNA downstream 6196 79727061 ~ 79782057 (+) False LOC110532970
XM_036934135.1 mRNA downstream 6196 79727061 ~ 79782057 (+) False LOC110532970
XM_036934136.1 mRNA downstream 6196 79727061 ~ 79782057 (+) False LOC110532970
XM_036934137.1 mRNA downstream 6196 79727061 ~ 79782057 (+) False LOC110532970
TU1055895 other upstream 119487 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 436115 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 517278 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 654712 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 932696 78775935 ~ 78787563 (+) True G927061
TU1055948 other downstream 6180 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 306137 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 591079 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 1100799 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1398700 81119565 ~ 81120877 (+) False G928731

Expression Profile