RNA id: TU1055994


Basic Information

Item Value
RNA id TU1055994
length 218
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G927842
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79809214 ~ 79809431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggaacagtagtggagagggtagcaagttttaagttcctcggcatacacatcacagacaaactgaattggtccactcacacagacagcatcgtgaagaaggcgcagcagcgcctcttcaacctcaggaggctgaagaaattcggcttgtcaccaaaagcactcacaaacttctacagatgcacaatcgagagcatcctgacgggctgtatcaccgcct

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055945 lncRNA upstream 23515 79784422 ~ 79785699 (+) False G927804
TU1055946 lncRNA upstream 23515 79784893 ~ 79785699 (+) True G927804
TU1055979 lncRNA upstream 52875 79755433 ~ 79756339 (+) True G927829
TU1055973 lncRNA upstream 61663 79747237 ~ 79747551 (+) True G927825
TU1055958 lncRNA upstream 84769 79724230 ~ 79724445 (+) True G927812
TU1056001 lncRNA downstream 16351 79825782 ~ 79826393 (+) True G927849
TU1056007 lncRNA downstream 20968 79830399 ~ 79830749 (+) True G927851
TU1056019 lncRNA downstream 48443 79857874 ~ 79912192 (+) True G927857
TU1056016 lncRNA downstream 80047 79889478 ~ 79894986 (+) True LOC118936797
TU1056414 lncRNA downstream 119137 79928568 ~ 79928778 (+) True G928123
XM_036934133.1 mRNA upstream 27157 79727061 ~ 79782057 (+) False LOC110532970
XM_036934140.1 mRNA downstream 73484 79882915 ~ 79895771 (+) False LOC118936797
XM_036934141.1 mRNA downstream 207526 80016957 ~ 80021704 (+) True LOC118936798
XM_036934146.1 mRNA downstream 544506 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 551596 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 817315 80626746 ~ 80651978 (+) False LOC110516989
TU1055948 other upstream 52170 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 208442 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 525070 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 606233 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 743667 79052491 ~ 79065547 (+) True LOC110515636
TU1056528 other downstream 217571 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 502513 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 1012233 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1310134 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1310134 81119565 ~ 81120246 (+) True G928731

Expression Profile