RNA id: TU1056414


Basic Information

Item Value
RNA id TU1056414
length 211
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G928123
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79928568 ~ 79928778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTGTTATTCATGATAAatcacacccctcctcctttaGACTGGCCTGAAGCAGCACACCAGTTGTTATTCATGATAAatcacacccctcctcctttaGACTGGCCTGAAGCAGCACACCAGTTGTTATTCATGATAAatcacacccctcctcctttaGACTGGCCTGAAGCAGCACACCAGTTGTTATTCATGATAAACCACACCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056019 lncRNA upstream 16376 79857874 ~ 79912192 (+) True G927857
TU1056016 lncRNA upstream 33582 79889478 ~ 79894986 (+) True LOC118936797
TU1056007 lncRNA upstream 97819 79830399 ~ 79830749 (+) True G927851
TU1056001 lncRNA upstream 102175 79825782 ~ 79826393 (+) True G927849
TU1055994 lncRNA upstream 119137 79809214 ~ 79809431 (+) True G927842
TU1056418 lncRNA downstream 2035 79930813 ~ 79932020 (+) True G928125
TU1056454 lncRNA downstream 25570 79954348 ~ 79954554 (+) True G928150
TU1056467 lncRNA downstream 51318 79980096 ~ 79980301 (+) True G928163
TU1056485 lncRNA downstream 65081 79993859 ~ 80007173 (+) False G928175
TU1056481 lncRNA downstream 66093 79994871 ~ 80005555 (+) False G928175
XM_036934140.1 mRNA upstream 32797 79882915 ~ 79895771 (+) False LOC118936797
XM_036934133.1 mRNA upstream 146511 79727061 ~ 79782057 (+) False LOC110532970
XM_036934141.1 mRNA downstream 88179 80016957 ~ 80021704 (+) True LOC118936798
XM_036934146.1 mRNA downstream 425159 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 432249 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 697968 80626746 ~ 80651978 (+) False LOC110516989
XM_036934156.1 mRNA downstream 762240 80691018 ~ 80713764 (+) False LOC118936381
TU1055948 other upstream 171524 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 327796 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 644424 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 725587 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 863021 79052491 ~ 79065547 (+) True LOC110515636
TU1056528 other downstream 98224 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 383166 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 892886 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1190787 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1190787 81119565 ~ 81120246 (+) True G928731

Expression Profile