RNA id: TU1056484


Basic Information

Item Value
RNA id TU1056484
length 546
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G928175
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79993859 ~ 80010323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caataaatccatgtaatatagtctacccacaccatcacaataaatccatgtaatatagtctacccacaccatcacaataaatccatgtaatatagtctacctacaccatcacaatacatccatgtaatatagtctacaccatcacaataaatccatgtaatatagcctacctacaccatcacaataaatccatgtaatatagtctacaccatcacaataaatccatgtaatatagtctacaccatcacaataaatccatgtaatatagtctacaccttcacaataaatccatgtaatatagcctacaccatcacaataaatccatgtaatatagcctacctacaccatcacaataaatccatgtaatatagtctacaccatcacaataaatccatgtaatatagtctccctacaccatcacaataaatccatgtaatatagcctacctacaccatcacaataaatccatgtaatagtctacaccatcacaacaaatccatgtaatatagtctacctacaccatcacaataaatccatgtaatatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056481 lncRNA upstream 838 79994871 ~ 80005555 (+) False G928175
TU1056467 lncRNA upstream 26092 79980096 ~ 79980301 (+) True G928163
TU1056454 lncRNA upstream 51839 79954348 ~ 79954554 (+) True G928150
TU1056418 lncRNA upstream 74373 79930813 ~ 79932020 (+) True G928125
TU1056414 lncRNA upstream 77615 79928568 ~ 79928778 (+) True G928123
TU1056512 lncRNA downstream 12839 80023162 ~ 80023401 (+) True G928198
TU1056530 lncRNA downstream 15582 80025905 ~ 80026113 (+) True G928207
TU1056524 lncRNA downstream 17981 80028304 ~ 80030415 (+) False G928205
TU1056527 lncRNA downstream 17981 80028304 ~ 80030415 (+) True G928205
TU1056539 lncRNA downstream 47622 80057945 ~ 80058396 (+) True G928215
XM_036934140.1 mRNA upstream 110622 79882915 ~ 79895771 (+) False LOC118936797
XM_036934134.1 mRNA upstream 224336 79727061 ~ 79782057 (+) False LOC110532970
XM_036934141.1 mRNA downstream 6634 80016957 ~ 80021704 (+) True LOC118936798
XM_036934146.1 mRNA downstream 343614 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 350704 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 616423 80626746 ~ 80651978 (+) False LOC110516989
XM_036934156.1 mRNA downstream 680695 80691018 ~ 80713764 (+) False LOC118936381
TU1055948 other upstream 249349 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 405621 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 722249 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 803412 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 940846 79052491 ~ 79065547 (+) True LOC110515636
TU1056528 other downstream 16679 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 301621 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 811341 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1109242 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1109242 81119565 ~ 81120246 (+) True G928731

Expression Profile