RNA id: TU1056524


Basic Information

Item Value
RNA id TU1056524
length 1869
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G928205
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80028304 ~ 80030415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccatatttcctatggtctctggagcagtgacctccatattccctatggtccctggagcagtgacctccatattccctatggtctctggagcagtgacctccatattccctatggtctctggagcagtgacctccatattccctatggtctctggagcagtgacctccatattGAAAAGGGGGTCATTTGCAACCaggtctcacagtctcactgcggAATTAGACGTGCATCCCTGTTTCATTATCCCTGTTTCATTATCCCTGTTTCATTATCGCCCAAATCTTCAGTTTAGACATTAAATACTAATTATTCAGGTTAGGCATTATCTCCCAATTCTTCAGGTTAGGCATTATCTCATAATTCTtcaggttagtcattgactcCTAATTCTTAAGGTTTTAGTCATTATCTCCTAATTCTTCAGGGTAGGCATTATATCCCAAATCTtcagtttagacattaactcctAATTCTTCAGGTAGGCATTATCTCCTAATTCTTCAGGTTAGGCATTATCTCCCAAATCTtcagtttagacattaactcctAATTCTTCAGGTTAGGCATTATCTCCTAATTCTTCAGGTTAGGCATTATCTCCTAATTCTTCAGTTTAGTCATTATCTCCTAATTCTTTGGGGTTAGTCATTATCTCCTAATTCTTCAGTTTAGGCATTATCTCCTAAGCCTAGTGACCAGTTTCCACATCTTCTCGTCAGACATGGGTGAACGTCGAATACCATTTTGTATCACCCGAATGTTAATGGTTCTGCTCTCCTCTGTTAAAACCAAATGGAATAAGCTactgtgcactgtgtgtgtgtgtatgtgcactgtgtgtgtgtgtgcggtgtttGTGCGTAAGTGAAAGAgaaagggtgtgagagagagagaggttgagagattGAGCGTGAGAGattgagggtgagagagggagagagagagagaggttgagagattgagggtgagagagggagagagagagagagggagagagggtgagtaaGTGTTTTCAGAATGTGAGTTTCGCCTTCTCCCAGCTGCTagatgaaatgtgtgtgtgtgtgtgtgtgtcagcgtgcgTTCGTGCgactccagtgtgtgtgagcatgcgactgcactgtgtgtttgtgagtgtccGTGCGACTGCAGTGTGTGAGGCTGAGAACACCCTACCACTCTCTGGGgagtgtctgtatcagtgtgtggaacttcagtgtgtgttagtgtgtgtgaatgtgtttatgtctgttagtgtgtgtgtgcctgttagtgtgtgtgtgcctgttagtgtgtgtgtgcctgttagtgtgtgtatgtctcgctctctctctggagagTGAATGCATCAGTGGAGGAGTCTAAACTACTATTCTGTGACTCTCAATTTATCATCCTATtgtcatcaaagatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctacctaaaTGCCATGAAACAATGAAATGTCTTTAAATACTTCTATCGATAgctatatttaatttatttatttatttattgtgtcaAGATCTAGACACTGTTGTTATGTATCCCCTTGTATATACTTGCCATTACCTTATAGGCTGTGTTtacaaattgcaccctattccttacatagtgcactactttagcaaaacacatagggaatagtgtgtgccGTTGTTGCGATGCCTCCATTGTCTAACTCCATTGTATAATCAATAATATGTTGTCAAATTCAAAACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056530 lncRNA upstream 2191 80025905 ~ 80026113 (+) True G928207
TU1056512 lncRNA upstream 4903 80023162 ~ 80023401 (+) True G928198
TU1056484 lncRNA upstream 17981 80006393 ~ 80010323 (+) False G928175
TU1056482 lncRNA upstream 17981 80009568 ~ 80010323 (+) True G928175
TU1056485 lncRNA upstream 21131 79993859 ~ 80007173 (+) False G928175
TU1056539 lncRNA downstream 27530 80057945 ~ 80058396 (+) True G928215
TU1056541 lncRNA downstream 28174 80058589 ~ 80060144 (+) True G928217
TU1056545 lncRNA downstream 32579 80062994 ~ 80063197 (+) True G928221
TU1056546 lncRNA downstream 32895 80063310 ~ 80064376 (+) True G928222
TU1056567 lncRNA downstream 47121 80077536 ~ 80102702 (+) True G928233
XM_036934141.1 mRNA upstream 6600 80016957 ~ 80021704 (+) True LOC118936798
XM_036934140.1 mRNA upstream 132533 79882915 ~ 79895771 (+) False LOC118936797
XM_036934135.1 mRNA upstream 246247 79727061 ~ 79782057 (+) False LOC110532970
XM_036934146.1 mRNA downstream 323522 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 330612 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 596331 80626746 ~ 80651978 (+) False LOC110516989
XM_036934156.1 mRNA downstream 660603 80691018 ~ 80713764 (+) False LOC118936381
XM_036934157.1 mRNA downstream 661286 80691701 ~ 80713764 (+) True LOC118936381
TU1056528 other upstream 85 80027002 ~ 80028219 (+) True G928206
TU1055948 other upstream 271260 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 427532 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 744160 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 825323 79200281 ~ 79202981 (+) True G927584
TU1056700 other downstream 281529 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 791249 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1089150 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1089150 81119565 ~ 81120246 (+) True G928731
TU1057265 other downstream 1154470 81184885 ~ 81313748 (+) False G928705

Expression Profile