RNA id: TU1056539


Basic Information

Item Value
RNA id TU1056539
length 452
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G928215
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80057945 ~ 80058396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGATATTTGGATTAAAATATGTCACAAtagacagggctctggtcaacagtagtgaactatgtcacaatagacagggctctggtcaacagtagtgaactatgtcacaatagacagggctctggtcaagagtagtgaaCTATGAAtagacagggctctggtcaacagtagtgaactatgtcacaatagacaaggctctggtcaacagtagtgaactatgtcacaatagacagggctctggtcaacagtagtgaactatgtcacaatagacagggctctggtcaacagtagtgaactatgtcacaATAGACAatgctctggtcaacagtagtgaactatgaatagatagggctctggtcaacagtagtgaactatgtcacaatacacaaggctctggtcaacagtagtgaactatgtcaTAATAGACAAGGctgtggtcaacagtagtgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056524 lncRNA upstream 27530 80028304 ~ 80030415 (+) False G928205
TU1056527 lncRNA upstream 27530 80028304 ~ 80030415 (+) True G928205
TU1056530 lncRNA upstream 31832 80025905 ~ 80026113 (+) True G928207
TU1056512 lncRNA upstream 34544 80023162 ~ 80023401 (+) True G928198
TU1056484 lncRNA upstream 47622 80006393 ~ 80010323 (+) False G928175
TU1056541 lncRNA downstream 193 80058589 ~ 80060144 (+) True G928217
TU1056545 lncRNA downstream 4598 80062994 ~ 80063197 (+) True G928221
TU1056546 lncRNA downstream 4914 80063310 ~ 80064376 (+) True G928222
TU1056567 lncRNA downstream 19140 80077536 ~ 80102702 (+) True G928233
TU1056573 lncRNA downstream 33181 80091577 ~ 80184154 (+) True G928238
XM_036934141.1 mRNA upstream 36241 80016957 ~ 80021704 (+) True LOC118936798
XM_036934140.1 mRNA upstream 162174 79882915 ~ 79895771 (+) False LOC118936797
XM_036934135.1 mRNA upstream 275888 79727061 ~ 79782057 (+) False LOC110532970
XM_036934146.1 mRNA downstream 295541 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 302631 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 568350 80626746 ~ 80651978 (+) False LOC110516989
XM_036934156.1 mRNA downstream 632622 80691018 ~ 80713764 (+) False LOC118936381
XM_036934157.1 mRNA downstream 633305 80691701 ~ 80713764 (+) True LOC118936381
TU1056528 other upstream 29726 80027002 ~ 80028219 (+) True G928206
TU1055948 other upstream 300901 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 457173 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 773801 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 854964 79200281 ~ 79202981 (+) True G927584
TU1056700 other downstream 253548 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 763268 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1061169 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1061169 81119565 ~ 81120246 (+) True G928731
TU1057265 other downstream 1126489 81184885 ~ 81313748 (+) False G928705

Expression Profile