RNA id: TU1056541


Basic Information

Item Value
RNA id TU1056541
length 276
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G928217
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80058589 ~ 80060144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtgaactatgtcacaatagacaaggctctggtcaacagtagtgaactatgtcacaatagacaaggctctggtcaacagtagtgaactatgtcacaatagacagggctctggtcaacagtagtgaactatgtcacaatagacaaggctctggtcaACAGTAGTGAACAATGAAtagacagggctctggtcaacagtagtgaactatgtcacaatagacagggctctggtcaacagtagtgaactatgtcacaatagacaaggctctggtcaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056539 lncRNA upstream 193 80057945 ~ 80058396 (+) True G928215
TU1056524 lncRNA upstream 28174 80028304 ~ 80030415 (+) False G928205
TU1056527 lncRNA upstream 28174 80028304 ~ 80030415 (+) True G928205
TU1056530 lncRNA upstream 32476 80025905 ~ 80026113 (+) True G928207
TU1056512 lncRNA upstream 35188 80023162 ~ 80023401 (+) True G928198
TU1056545 lncRNA downstream 2850 80062994 ~ 80063197 (+) True G928221
TU1056546 lncRNA downstream 3166 80063310 ~ 80064376 (+) True G928222
TU1056567 lncRNA downstream 17392 80077536 ~ 80102702 (+) True G928233
TU1056573 lncRNA downstream 31433 80091577 ~ 80184154 (+) True G928238
TU1056592 lncRNA downstream 109416 80169560 ~ 80169922 (+) True G928255
XM_036934141.1 mRNA upstream 36885 80016957 ~ 80021704 (+) True LOC118936798
XM_036934140.1 mRNA upstream 162818 79882915 ~ 79895771 (+) False LOC118936797
XM_036934135.1 mRNA upstream 276532 79727061 ~ 79782057 (+) False LOC110532970
XM_036934146.1 mRNA downstream 293793 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 300883 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 566602 80626746 ~ 80651978 (+) False LOC110516989
XM_036934156.1 mRNA downstream 630874 80691018 ~ 80713764 (+) False LOC118936381
XM_036934157.1 mRNA downstream 631557 80691701 ~ 80713764 (+) True LOC118936381
TU1056528 other upstream 30370 80027002 ~ 80028219 (+) True G928206
TU1055948 other upstream 301545 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 457817 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 774445 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 855608 79200281 ~ 79202981 (+) True G927584
TU1056700 other downstream 251800 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 761520 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1059421 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1059421 81119565 ~ 81120246 (+) True G928731
TU1057265 other downstream 1124741 81184885 ~ 81313748 (+) False G928705

Expression Profile