RNA id: TU1056546


Basic Information

Item Value
RNA id TU1056546
length 608
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G928222
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80063310 ~ 80064376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacacacacacacattaacgtACACGTCATGAAATGTTACTTGTGTTTAACGGGAATACGTGTGTTTCTACAGAAtgacctcattaaagggatgtgtctgttctatagggttctatatctacagaatgacctcattaaagggatgtgtctgttctatagggttctatatctacagaatgacctcattaaagagatgtgtctgttctatagggttccatatctacagaatgacctcattaaagggatgtgtctgttctatagggttccattacctcattaaagggatgtgtctgttctatagggttccattacctcattaaagggatgtgtctgttctatagggttcCATATCTACAGAATtacctcattaaagggatgtgtctgttctatagggttctaTATCTACAGAATtacctcattaaagggatgtgtctgttctatagggttctatatctacagaatgacctcattaaagggatgtgtctgttctgtagggttctatatctacagaatgacctcattaaagggatgtgtctgttctatagcCTTCCATATCTACAGAAtgacctcattaaagggatgtgtctgttctatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056545 lncRNA upstream 113 80062994 ~ 80063197 (+) True G928221
TU1056541 lncRNA upstream 3166 80058589 ~ 80060144 (+) True G928217
TU1056539 lncRNA upstream 4914 80057945 ~ 80058396 (+) True G928215
TU1056524 lncRNA upstream 32895 80028304 ~ 80030415 (+) False G928205
TU1056527 lncRNA upstream 32895 80028304 ~ 80030415 (+) True G928205
TU1056567 lncRNA downstream 13160 80077536 ~ 80102702 (+) True G928233
TU1056573 lncRNA downstream 27201 80091577 ~ 80184154 (+) True G928238
TU1056592 lncRNA downstream 105184 80169560 ~ 80169922 (+) True G928255
TU1056594 lncRNA downstream 156348 80220724 ~ 80245858 (+) True G928257
TU1056609 lncRNA downstream 196355 80260731 ~ 80266147 (+) True G928265
XM_036934141.1 mRNA upstream 41606 80016957 ~ 80021704 (+) True LOC118936798
XM_036934140.1 mRNA upstream 167539 79882915 ~ 79895771 (+) False LOC118936797
XM_036934135.1 mRNA upstream 281253 79727061 ~ 79782057 (+) False LOC110532970
XM_036934146.1 mRNA downstream 289561 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 296651 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 562370 80626746 ~ 80651978 (+) False LOC110516989
XM_036934156.1 mRNA downstream 626642 80691018 ~ 80713764 (+) False LOC118936381
XM_036934157.1 mRNA downstream 627325 80691701 ~ 80713764 (+) True LOC118936381
TU1056528 other upstream 35091 80027002 ~ 80028219 (+) True G928206
TU1055948 other upstream 306266 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 462538 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 779166 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 860329 79200281 ~ 79202981 (+) True G927584
TU1056700 other downstream 247568 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 757288 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1055189 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1055189 81119565 ~ 81120246 (+) True G928731
TU1057265 other downstream 1120509 81184885 ~ 81313748 (+) False G928705

Expression Profile