RNA id: TU1056594


Basic Information

Item Value
RNA id TU1056594
length 245
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G928257
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80220724 ~ 80245858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttccaatacctgtagaagaaacaacacatagaatcaggctgtccactgttccaatacctgtagaagaaacaacacagaatcagactgtccactgttccaatacctgtagaagaaacaacacagaatcaggctctccactgttccaataactgtagaagaaacaacacagaatcaggctgtccactgttccaatacctgtaggagaaacaacacatagaatcaggctgtccactgttccaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056573 lncRNA upstream 36570 80091577 ~ 80184154 (+) True G928238
TU1056592 lncRNA upstream 50802 80169560 ~ 80169922 (+) True G928255
TU1056567 lncRNA upstream 118022 80077536 ~ 80102702 (+) True G928233
TU1056546 lncRNA upstream 156348 80063310 ~ 80064376 (+) True G928222
TU1056545 lncRNA upstream 157527 80062994 ~ 80063197 (+) True G928221
TU1056609 lncRNA downstream 14873 80260731 ~ 80266147 (+) True G928265
TU1056702 lncRNA downstream 74956 80320814 ~ 80321080 (+) True G928337
TU1056706 lncRNA downstream 85727 80331585 ~ 80331930 (+) True G928340
TU1056737 lncRNA downstream 147378 80393236 ~ 80394414 (+) True G928367
TU1056788 lncRNA downstream 194685 80440543 ~ 80459725 (+) True G928402
XM_036934141.1 mRNA upstream 199020 80016957 ~ 80021704 (+) True LOC118936798
XM_036934140.1 mRNA upstream 324953 79882915 ~ 79895771 (+) False LOC118936797
XM_036934135.1 mRNA upstream 438667 79727061 ~ 79782057 (+) False LOC110532970
XM_036934146.1 mRNA downstream 108079 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 115169 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 380888 80626746 ~ 80651978 (+) False LOC110516989
XM_036934156.1 mRNA downstream 445160 80691018 ~ 80713764 (+) False LOC118936381
XM_036934157.1 mRNA downstream 445843 80691701 ~ 80713764 (+) True LOC118936381
TU1056528 other upstream 192505 80027002 ~ 80028219 (+) True G928206
TU1055948 other upstream 463680 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 619952 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 936580 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 1017743 79200281 ~ 79202981 (+) True G927584
TU1056700 other downstream 66086 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 575806 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 873707 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 873707 81119565 ~ 81120246 (+) True G928731
TU1057265 other downstream 939027 81184885 ~ 81313748 (+) False G928705

Expression Profile