RNA id: TU1056702


Basic Information

Item Value
RNA id TU1056702
length 267
lncRNA type intronic
GC content 0.33
exon number 1
gene id G928337
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80320814 ~ 80321080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttacattctgtcagttttacattctgtctctctgtcagttttacattctgtcagttttacattctgtcagttttacattctgtctctctgtcagttttacattctgtctctctgtcagttttacattctgtcagttttacattctgtcagttttacattctgtcagttttacattctgtcagttttacattctgtctctctgtcagttttacattctgtcagttttacattctgtcagttttacattctgtcagttttacattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056609 lncRNA upstream 54667 80260731 ~ 80266147 (+) True G928265
TU1056594 lncRNA upstream 74956 80220724 ~ 80245858 (+) True G928257
TU1056573 lncRNA upstream 136660 80091577 ~ 80184154 (+) True G928238
TU1056592 lncRNA upstream 150892 80169560 ~ 80169922 (+) True G928255
TU1056567 lncRNA upstream 218112 80077536 ~ 80102702 (+) True G928233
TU1056706 lncRNA downstream 10505 80331585 ~ 80331930 (+) True G928340
TU1056737 lncRNA downstream 72156 80393236 ~ 80394414 (+) True G928367
TU1056788 lncRNA downstream 119463 80440543 ~ 80459725 (+) True G928402
TU1056789 lncRNA downstream 123721 80444801 ~ 80463752 (+) True G928403
TU1056807 lncRNA downstream 154711 80475791 ~ 80475993 (+) True G928415
XM_036934141.1 mRNA upstream 299110 80016957 ~ 80021704 (+) True LOC118936798
XM_036934140.1 mRNA upstream 425043 79882915 ~ 79895771 (+) False LOC118936797
XM_036934135.1 mRNA upstream 538757 79727061 ~ 79782057 (+) False LOC110532970
XM_036934146.1 mRNA downstream 32857 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 39947 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 305666 80626746 ~ 80651978 (+) False LOC110516989
XM_036934156.1 mRNA downstream 369938 80691018 ~ 80713764 (+) False LOC118936381
XM_036934157.1 mRNA downstream 370621 80691701 ~ 80713764 (+) True LOC118936381
TU1056700 other upstream 4245 80311944 ~ 80316569 (+) True G928335
TU1056528 other upstream 292595 80027002 ~ 80028219 (+) True G928206
TU1055948 other upstream 563770 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 720042 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 1036670 79281386 ~ 79284144 (+) True G927606
TU1057129 other downstream 500584 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 798485 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 798485 81119565 ~ 81120246 (+) True G928731
TU1057265 other downstream 863805 81184885 ~ 81313748 (+) False G928705
TU1057333 other downstream 918017 81239097 ~ 81242550 (+) False LOC118936811

Expression Profile